Amaranthus tricolor (tampala): 130828734
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Entry
130828734 CDS
T09367
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130828734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130828734
03036 Chromosome and associated proteins [BR:
atri03036
]
130828734
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130828734
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130828734
PBAF complex
130828734
GBAF(ncBAF) complex
130828734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
FtsL_2
Motif
Other DBs
NCBI-GeneID:
130828734
NCBI-ProteinID:
XP_057550679
LinkDB
All DBs
Position
1:7755365..7766509
Genome browser
AA seq
1050 aa
AA seq
DB search
MEEKRREAGSPSPAATIPGGSSMKLTDSPATEPPPRRRGQKRKSTNSSSTTSSAPPKRHA
REKAAAAAAAASGSIFSNLPPIHNGPLTRARQLSDSNAAIFSALNAIKNEASMTTVNDSA
VIDREESAVNEEIKKFQALIDAEFDSIRNRDASVHVVPVAAGWFSWTNIHSIEKQTLCSF
FNGKVENRTPEIYKEIRNWIMKKFHANPSTNIELKDLSELSVGDPDARQEIMEFLDHWGL
INYHPLPQSDPAKDNADPNTDAEMAENTDSLLEKLYRFENEQSSLQLVPRAKMSTATVPS
GLFPESIAEELVKQEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTECYNNGKFGSGMC
PSDFILMEPAEASGTTGGKWTDQETLLLLEALELFKENWNEIAEHVATKTKAQCILHFLQ
MPIEDSFLDYDDKINGVQENGEPTSNIESPVPNDISEPSEGKASKDNSGAAEGVSGNDDS
EPSAGKINKDKPELEMKTDANAAQAVSVEAETLNFEEAPDGNVVHDKGDDIVIKALKEAF
HIAGCPLTPEDKLSFAEAGNSVMTLAAFLSQLVEPGLATASAHDSLKTMSHSSPGLQLAE
RHCFVLEDPPDVEKELIASESMTTENIDQNASEMAKENLKNDKTSIRNEAKDNPLSVEKH
STESQIDKKKASKSINDPTLPPRELDACADNSRLPEKPVEETLLQVTEKPDKESTQITEK
PDEKIPKVSEKTDIETQLKGKPDKETPQVTEKSEEKSQVTEKSDEEKSEVAEKPDAVSKV
EHADTKLVDELKSSDVQNEQLDTTKEQVSSATEVRPPSVCEPENLKTTTESVQCTDSQKD
KDMVLSSVVSDKTGQRDVPAAVPMDAFVADAGEDKMEVDKSEDTKSMKKIRTKEEDNVAK
LKRAALATLSAAAVKAKLLANQEEGEIRQLAIVMIEKQMRKLEIKLSYFTEMESAIMRVR
EHLERSRQKLFSERAQIIASRLGTLPPSRMLPSSYPMNKMPPGFVNSMMRPPLSMGAQRP
FISRPVATSAPPTMNTSAPPEKTGPEGKPT
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaaaacggcgagaagcgggttctccatcgccggcagcgacaatacccggcgga
tcatccatgaaattaactgattctccggccactgaaccacctccgcgccggcgaggtcaa
aagcgcaaatcaacaaactcatcatccaccacctcttcggcgcctcccaaacgacacgct
cgcgaaaaagcagcagcagcagccgccgccgcatctggtagtattttttctaatttacct
ccaattcataatggtcctttaactagagctcgacagctgtccgatagcaatgccgccatt
ttttctgctcttaatgctattaagaatgaggcttctatgacgacggtgaatgattctgcg
gttattgacagagaagagagtgctgtgaatgaggaaataaagaagtttcaagcattgatt
gatgcggagtttgattcgattcggaatcgtgatgcgagtgttcatgttgttcctgttgct
gctggttggttttcctggacaaacattcactcaatcgagaaacagacgctgtgttccttc
ttcaatgggaaggtcgagaatcggactcctgaaatctacaaggagatacggaattggatt
atgaagaagtttcatgccaatccaagcacaaacattgaattaaaagatctgtcagagctg
tctgttggggatccagatgcaagacaagaaattatggagtttctagatcactggggtttg
attaactatcatcctcttcctcagagtgaccctgctaaagacaatgctgatccaaataca
gatgctgagatggcagaaaatacagattcattactcgaaaagttgtatcggtttgaaaat
gagcaatcctctctacaattagttccaagagccaaaatgtcgacagcaacagttccttct
ggtctttttcctgaatctattgctgaagagttggtaaaacaagagggaccggcagttgaa
tatcattgcaattcctgttctgctgactgttctcgcaagcgctaccattgccagaagcag
gcagattttgatttgtgtactgagtgctataacaatgggaaatttggatcgggcatgtgc
ccctcagatttcattctcatggagcctgctgaggcttctggtacaacaggtgggaaatgg
actgaccaggagactctcctcctcctagaagcattggaactttttaaagagaactggaat
gaaatagcagagcacgttgccacaaaaactaaagctcaatgtatattgcattttcttcaa
atgccaattgaggatagttttctagattatgatgataaaataaatggtgttcaagagaat
ggagaaccaacctcaaacattgaatcacctgttcccaatgatatttcagaaccctcagaa
gggaaagcaagtaaagataattccggagcagcagagggtgtaagtggtaatgatgactct
gaaccatcagcaggcaaaattaacaaagacaagccagagttggagatgaaaactgatgct
aatgcagcccaagctgtctcagtggaagctgaaactttaaattttgaggaagctccggat
ggaaatgtggttcatgataaaggtgatgacatagtcatcaaggcactcaaggaggcattt
catattgctggctgcccacttactccagaggacaaactttcgtttgctgaagcagggaat
tctgtaatgactttggctgctttcctatctcaattggttgagccgggtcttgctactgca
tcggcacatgattcactgaagacgatgtcccatagttctccagggttgcaactagctgaa
aggcactgctttgttctggaggatccaccagatgttgagaaagaacttattgcctcagaa
agtatgactactgaaaatattgaccagaatgcttcggagatggcgaaagagaatttgaaa
aatgacaaaacaagcatccgaaatgaggccaaggacaacccgttatctgttgaaaagcat
tcaacagagagccaaattgataagaagaaagcttctaaatcaatcaatgatccaacattg
cctcctagagagctggatgcatgtgcagacaattctagattaccagagaagcctgttgaa
gagacattattacaagtcacagaaaagccagacaaagagtcaacgcaaatcacagaaaaa
ccagatgaaaaaatccctaaggtctcagaaaagactgatatagaaacccaactcaaggga
aaacctgataaagagacaccccaagtcacagaaaaatctgaagagaagtctcaagtaaca
gagaagtctgatgaagagaaatcagaagtagcagaaaagcctgatgctgttagtaaggtt
gagcacgctgacacaaagctagttgatgagctaaagagtagtgacgtgcagaatgagcaa
ttggatactacgaaggagcaagtttcttctgcaactgaagttagacctccttcagtatgt
gaaccagagaacttaaaaactacaacagaaagtgtgcagtgcacggattcccagaaagat
aaagatatggtgctcagttctgttgtttctgacaaaactgggcaacgagatgtgccagct
gcagttcccatggatgcatttgtggcagatgcaggagaagataaaatggaagttgataaa
tctgaggatacaaaatctatgaaaaaaatacggacaaaggaggaagacaatgtagctaag
ctaaagcgcgcagctttggctacactctctgctgccgctgtgaaggccaagcttctggct
aaccaagaagaaggcgaaatcaggcagctcgccattgtaatgatcgagaagcagatgcga
aagttggagatcaagttaagttatttcacagaaatggagagtgctattatgcgggttaga
gagcatctggaacgatcaaggcaaaagctctttagtgaacgggctcaaatcattgcaagc
cgacttggaacactacctccatctaggatgttgccatcatcatacccaatgaacaagatg
cctccaggctttgtaaattcaatgatgaggccaccattgagcatgggtgctcaaaggcct
ttcatctcaaggcctgttgcgacgtctgcacctcctactatgaacacatctgccccacct
gagaagacagggccagaaggaaagccaacataa
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