Amaranthus tricolor (tampala): 130828833
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Entry
130828833 CDS
T09367
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130828833
03041 Spliceosome [BR:
atri03041
]
130828833
03036 Chromosome and associated proteins [BR:
atri03036
]
130828833
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130828833
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130828833
mRNA cycle factors
Common to processing body (P body) and stress granule
130828833
Spliceosome [BR:
atri03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130828833
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130828833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
130828833
NCBI-ProteinID:
XP_057550825
LinkDB
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Position
12:complement(14604374..14610576)
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AA seq
630 aa
AA seq
DB search
MVPSRANYDFPSHPSPTRPTRGSTRSSRSSTRSPSFSGSQSDHRGGRGGSHYGGGGFHQS
RGGQSNSRGGSFGGRSKGWWGPSSSSVDNVTNPNPIEDVCEKFDELEVIEESKELGESFG
IYKNSNMINFDAYDDIPVEVSGQNVPKCATSFAEIDLGKALNENIKRCKYVKPTPIQCHA
IPIALAGRDLMACAQTGSGKTAAFCFPIIAGILKKNSPQRQPLIRDGGGFGSRMFSPVAL
IMSPTRELASQIHDEAIKFAYQTGVKVAVAYGGTPMGDQLRRLAKGVDILVATPGRLVDM
VERGKVSLCMVRYLALDEADRMLDMGFEPQIRKIVQQMNMPQPGSRQTMLFSATFPTEIQ
RLATDFLSNYIFLAVGKVGSSTDLIEQKVEFVDDFDKRRYLKDILMSEKSSGANGKHPLT
IVFVETKRGADDLANWLSRSGFPATAIHGDKVQWERESVLRSFKSGDTPIIVATDVAARG
LDIPSVAHVINFDMPRDIDDYVHRIGRTGRAGKSGFATAFFNDKNQPISRALVELMEDNH
QEVPSWLTECAETPSYGNGSGRSRRSRGGNFGGRDYRKFEQSSNNYSSTGEYSSAETFAD
STTSEAVDPYSSPTYGLTHGYESIVATGWD
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggtaccatctagggccaattatgatttcccttcccacccttctccaactcgcccaact
cgtgggtcgactcgttcttcacggtcgtctactcgttctccgtcgtttagtgggtctcag
tctgaccaccgtggaggaagaggtggatcccattatggcggaggtgggtttcatcagagt
aggggtgggcaatctaatagtagaggtgggtcttttggaggtaggtccaagggttggtgg
ggtcccagtagtagtagcgttgataatgttacaaacccaaatccaattgaggatgtatgt
gaaaaatttgatgaacttgaagttatcgaagaaagcaaagaactcggggaaagttttggt
atttataaaaattctaatatgattaactttgatgcatatgatgatataccagtagaagta
agtgggcagaatgtaccaaaatgtgcaacttcatttgctgagattgatttggggaaagcc
ttaaatgagaatataaagaggtgcaagtatgttaagcctacaccaatacaatgtcatgca
attcctattgcattagcaggtagggatttaatggcttgtgctcaaactgggtctggaaaa
acagctgcattttgttttcctattattgctgggattttgaaaaaaaattctccacaacgg
cagccattaatcagagatggtggtggatttggtagtaggatgtttagtcctgttgcactt
atcatgtctcctactagagagctggcttctcagattcatgatgaggccatcaagtttgct
taccaaacaggagtgaaggtggctgtcgcatatggaggaactcctatgggagatcagcta
cgcagattggcaaaaggcgttgatatacttgtcgctacaccagggcgcctagttgacatg
gtcgagaggggaaaagtgtctctttgtatggttagatatttggctctagatgaggcagat
agaatgctggatatgggttttgagcctcaaatccgtaagattgtacagcagatgaatatg
cctcaaccaggttcaagacagacgatgctttttagtgccacatttcccaccgagatccag
aggctagcaactgatttcctctcaaactacatatttctggctgttggaaaagttggttca
agcactgatctgattgaacaaaaagtggagtttgttgatgattttgacaagagaaggtat
ttgaaggatatacttatgtctgaaaagtcgagcggggctaatggaaagcatcctttgacc
attgttttcgtcgaaactaaaaggggagctgatgatcttgctaactggctatcccgcagt
ggttttccagcgacagcaattcatggtgacaaagtgcagtgggagagagaaagcgtgttg
agatcctttaagagtggagatactccaatcatcgttgcaactgatgttgcagcacgaggt
ctcgatattccatcagtggctcatgtaatcaactttgacatgccgcgagacatcgacgat
tatgttcatcgcataggacgaacagggcgtgcgggtaagtcaggtttcgcaactgctttc
tttaacgacaagaaccagccaatctccagagcacttgttgagcttatggaggacaatcac
caagaagtcccttcatggctcaccgagtgtgccgagacaccttcttatggaaatggcagt
ggcagaagtcgtcgttctcgaggtggaaactttggtggccgtgattatcgtaaatttgaa
caaagttctaacaattactcctctactggtgaatattcaagcgctgaaacttttgctgat
agtactacatctgaggcagttgatccttattcttctccgacatatggtcttactcatgga
tacgagtcgattgtggccactggctgggattga
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