Amaranthus tricolor (tampala): 130828852
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Entry
130828852 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130828852 isoform X1
KO
K07573
exosome complex component CSL4
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130828852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130828852
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130828852
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
130828852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
CHASE5
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
130828852
NCBI-ProteinID:
XP_057550853
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Position
12:15568640..15575588
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AA seq
199 aa
AA seq
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MREQDGDNTEKVSPGDVVGKAIELIPGKGTYLAADSAGNKLIYASLTGCLTLSPHSQDKR
SVAEVTGHKAHGAVPEPGCTVLARVKKVMAKMASADIMCVGSKSVREKFTGIIRQQDVRA
TEIDKVDMHASFRAGDIVRAVVLSLGDARAYYLSTAKNELGVVSAESTAGETMIPISWTE
MQCPITGQIEQRKVAKVGN
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgagagaacaagatggagataacacagaaaaggtaagtccaggagatgttgttggtaag
gctattgaacttatacctggtaaaggtacttaccttgctgctgattccgctggcaataaa
ctcatttacgcttctcttactggctgcctcaccctttctcctcattctcaagataagagg
tcagttgcggaggtaaccggtcataaagcgcatggtgcggtccctgaacctggttgtaca
gtccttgcccgagtcaaaaaggtgatggctaaaatggcttcagcagatatcatgtgtgtt
ggcagcaagtctgtcagagaaaagttcacaggcataatcaggcagcaggatgtaagagca
actgagattgacaaggttgatatgcatgcttcattccgagccggtgatattgtcagggca
gtagttctatccttgggagatgcaagggcatattacttgtcaacagcaaagaatgagttg
ggtgttgtatccgccgaaagcactgcaggtgagacaatgataccaattagttggacagag
atgcaatgtcctataacaggccaaattgagcagagaaaagttgctaaggttggaaactga
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