Aegilops tauschii (wheat D): 109734218
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Entry
109734218 CDS
T04345
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109734218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109734218
Enzymes [BR:
ats01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109734218
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109734218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109734218
NCBI-ProteinID:
XP_020149017
LinkDB
All DBs
Position
2D:complement(421157814..421162057)
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AA seq
737 aa
AA seq
DB search
MQCRRRLAPLLRAPSPKTLLPLLLSRLVSSSSPSSPPPSRGGGDEAGDGSVAGVAVKQVT
RGNLAEALEELRARVRDAAFVGIDLEMSGVTSAPWRDTFELDRADVRYLKLRDSAKRFAV
LQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPYDSSSHEFLCQTTSLDFLAKHQFDFNT
CFHEGISYLSRAQEEEALQKLNVLHHDGISAFPNTSKQEEDVQLKSTADLLFSERMKIRF
NEWRDAISANPRVDNHKLGSNKFTTDQFQTVFFKMRPAIMLDGFTSHQLKLIQQVLRKNF
RDLMYVCTFGEDETSERRVVYTDNNEDSILLMKDVQEDLFRRRKAKVESAIGIRHVIDLI
ASERKLIVGHSCFLDIAQVYSKFIGPLPSSIKEFALAINRIFPHVVDTRHLMSASDAVQH
LMRQKSKALSSAFSLLCPAFHSTAGEASIPAPVRIEVEADETTLSCFASGAKHEAGYDAF
MTGCVFAQLCAHIGVKFEDFTPKENLEMNKKMKKYINLLPPSFNSGTVLDLRTGMERADA
CYKLRYPAAVHDNIVLIWGFQSGLSAKDMKGCICKVFGPASVTTVFSIDSTAVLIQFSKQ
ESVNDFMDLKATLEKQDSAISLLHPLSTILEGGQTRAANYDTYRDICSSSVTKYFFADQA
NAVCSASDTELRGENVDAGDALGTNSVLDETAHTLVKHAEGTKHCSKKQDATDISCQDIL
DALQDGKTLFGKQTRRT
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgccgccgccgcctcgcccccctcctccgcgcgccgtcgcccaaaaccctcctc
ccccttctcctctcccgcctcgtctcctcctcctccccctcctccccgccgccctctagg
ggcggcggggatgaagccggggacggcagcgtcgccggggtggcggtgaagcaggtgacg
cgggggaacctggcggaggcgctggaggagctgcgggcgcgggtgcgcgacgccgcgttc
gtcgggattgacctggagatgagcggcgtcaccagtgcaccgtggcgggacaccttcgag
ctcgaccgcgccgacgtccggtacctcaagctccgcgactccgccaagcgcttcgccgtg
ttgcagctcggcgtctgccccttccgctgggaccccgccaaatccgccttcgttgcccat
ccgcataacttttttatcttccctcgcaaggagcttccatatgacagttcatctcacgaa
tttctctgtcagaccacttcacttgacttcctagcaaaacaccagtttgatttcaacacg
tgcttccatgaaggaatatcttatttatccagagcacaagaagaagaggctcttcagaaa
ctaaatgtactgcatcatgatggaatatctgcatttccaaatacttctaaacaggaagaa
gatgtgcagttaaagagtactgctgatcttcttttctcagagagaatgaagatcagattt
aatgagtggcgtgatgcgataagcgccaaccccagggtggataaccataagttaggaagc
aataaattcaccacagaccaatttcagacagttttcttcaaaatgcgcccagctattatg
cttgatgggtttacatcacatcaattaaagttaattcaacaggttttgagaaaaaacttt
agagacctcatgtatgtttgtacatttggcgaggatgaaacatcagaaaggagagtagtt
tatacagacaacaacgaagacagtatattattgatgaaagatgtgcaagaagatctattc
agaagaagaaaagcaaaagtggaatcagcaataggaatccgccatgtcattgatcttatt
gcctcagaaagaaaattgattgttggtcacagttgtttcctagatattgcacaagtctac
tccaaatttattgggcctcttccctcatccattaaggaatttgccttggctatcaacaga
attttcccacatgttgtagatactaggcatcttatgtctgccagcgatgcggttcagcat
ctgatgaggcagaaaagcaaagcactttcttcagccttctcattattgtgccctgcattt
cattcaactgctggggaagcatctatcccggctcctgtgagaatagaagtcgaggcagat
gaaacaacgttatcatgctttgcttcaggtgctaagcatgaggcagggtatgatgcattc
atgactggatgtgtttttgcgcagttgtgtgcccatattggcgtcaaatttgaagacttc
acacctaaggagaacctagagatgaataagaagatgaagaaatatatcaatcttctgccc
cctagctttaacagcggaacagtacttgatttgcgtactggaatggagagagcagatgca
tgttataagcttagatatcctgctgctgtgcatgataacattgttctcatctggggattc
caatctgggctgagcgcaaaagatatgaagggctgcatctgcaaagtgtttggcccagct
tcagtaacgaccgtcttctcgatcgattccactgctgttctcattcagttcagtaaacaa
gagtctgtaaatgatttcatggatctgaaggctacgttggagaagcaagatagtgctatt
tcactcttgcaccctctgtcaactatattagaaggaggccaaacacgagctgcaaactat
gatacctacagagacatctgcagctcatctgtaacgaagtatttctttgctgatcaagct
aatgcggtctgttcggcttcagatactgagctcagaggtgagaacgtagatgccggtgat
gcactgggaacaaatagcgttcttgatgaaactgcgcataccttggtaaagcatgcagaa
ggaaccaagcattgttccaagaagcaagatgctactgatatttcatgccaagacatcttg
gatgcgcttcaagatggtaaaactttatttggtaaacaaaccaggcggacatga
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