Aegilops tauschii (wheat D): 109748167
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Entry
109748167 CDS
T04345
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109748167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109748167
Enzymes [BR:
ats01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109748167
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109748167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
ATP_bind_1
AAA_22
ABC_tran
CbiA
SRPRB
AAA_10
AAA_29
MMR_HSR1
GTP_EFTU
AAA_24
Motif
Other DBs
NCBI-GeneID:
109748167
NCBI-ProteinID:
XP_020162793
LinkDB
All DBs
Position
6:182773630..182778167
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AA seq
438 aa
AA seq
DB search
MAATGAAAPAPAAVQPPRQFKLDPQSELRVEVLPDATLRVRLVSGTAEIFGTELPPEGWL
TIPPRSKIAIFTWHGATVELDGVSESEYTSDETPMVIYVNTHAILDARRARARAAQGGDL
EASQGPRVIVVGPTDSGKSTLCKMLLSWAAKLGWKPTYVDLDIGQGSITIPGCISATPIE
KPIDIVDGIPLEMPLAYFYGHPNPSINPDVYKALMRELAQTLETQFSGNAESRAAGMVIN
TMGWVEGLGYELLLNAIDIFKANVVLVLGQEKLWKMLKDAVQSKPNIDVVKLHKSEGVVL
RNSKYRQKTRSFRIKEYFYGIANDLAPHSNVVNFSDVSVFRIGSGHQAPRSALPIGAEPV
ADPTRLVAVNISTDMVHTVLAVSYAKEPDEIISSNVAGFIHVTDVDIQRKKLTYIAPCPG
DLPSRLLIASSLTWYEQA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaccggcgctgccgcgcccgcgcccgcggccgtgcagccgccgcggcagttc
aagctcgacccgcagagcgagctccgcgtggaggtgctcccggacgcgaccctccgcgtg
cgcctcgtctccggcacggcggagatcttcggcaccgagctcccgcccgagggctggctc
accatcccgccccgctccaagatcgccattttcacgtggcacggcgcgacggtggagctg
gacggggtcagcgagagcgagtacacgtccgacgagacgccgatggtgatttatgtcaac
acgcatgcgattctcgatgcacggagggcgagggcgagggcagcgcagggaggcgacttg
gaggcctcacagggacctagagtgattgttgtggggccaactgattctggaaaaagcact
ctgtgcaaaatgctccttagctgggctgccaaactgggatggaagcctacatatgtggat
ttagatattggccagggttccataaccatacctggatgtatttctgctacaccaatagag
aaacccatagatatagttgatgggattcctttggagatgccgcttgcatacttttatggc
catccaaatccaagtattaatccagatgtttacaaagcgctcatgagagagctagctcaa
acattagagacacagttctctgggaatgctgaatctagggcggccggtatggttattaac
acaatggggtgggttgaaggccttggctatgagttacttcttaatgcaattgacatcttc
aaggctaatgtagtgctggtattgggacaggagaagctctggaagatgttaaaagatgca
gtacaaagtaagcccaatatcgatgtcgtaaaacttcataaatcggagggtgttgtccta
aggaattcaaaatatcgtcaaaagactaggagctttcgtatcaaggagtacttttatggg
attgcaaacgatctggcaccacattcaaatgtagtcaactttagtgatgtttctgttttc
agaattggtagtggacatcaagctccacggtcagctttaccaattggtgcagagcctgtg
gcagatcccactcggcttgttgctgtcaacatcagcactgatatggtccacacagtgctt
gctgtttcttatgcgaaggaacctgatgaaataatttcgagcaacgttgccggattcatc
catgtcacagatgttgacatccaaaggaagaagctgacgtacatcgcgccttgcccagga
gacctgccaagcaggctgttaatcgcgagctccctgacatggtacgagcaggcttga
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