Aegilops tauschii (wheat D): 109749369
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Entry
109749369 CDS
T04345
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03022
Basal transcription factors
ats03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109749369
09124 Replication and repair
03420 Nucleotide excision repair
109749369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ats03021
]
109749369
03400 DNA repair and recombination proteins [BR:
ats03400
]
109749369
Transcription machinery [BR:
ats03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109749369
DNA repair and recombination proteins [BR:
ats03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109749369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
IBR_1
Tfb4
Motif
Other DBs
NCBI-GeneID:
109749369
NCBI-ProteinID:
XP_020163918
LinkDB
All DBs
Position
2D:complement(466628670..466632174)
Genome browser
AA seq
430 aa
AA seq
DB search
MYGVGVGGGGGGFNAPSTASGRRKNQEDDEEEEEEETGDGRVLEAWERAYADDRSWEALQ
EDESGLLRPIDTKNLVHSQYRRRLLLRSAAAAARIQKGLIRYLYIVIDLSKAASEMDYRP
SRMAVVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTEIGGSPESQINALMGKLECS
GDSSLQNALELVNGYLNQIPSYGHKEVLFLYSALNTCDPGDIMETIEKCKKSKVRCSVIG
LAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGA
EDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVA
PFDEVTFKLGQKGGQNCFGCQQSLINTGGQSNIHVRCPKCNHHFCFDCDIYIHESLHNCP
GCESQRSSSR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcgtcggcggcggcggaggcgggttcaacgcgccgtccacggcctcc
gggcggcgcaaaaaccaggaggacgacgaggaagaggaggaggaggagacgggcgacggc
cgcgtcctcgaggcatgggagcgcgcctacgccgacgaccgctcgtgggaggcgctgcag
gaggacgagtcgggcctgctccgccccatcgacaccaagaacctcgtccactcgcagtac
cgccgccgcctcctgctccgctccgccgccgccgcggcccgcatccagaagggcctcatc
cgctacctctacatcgtcatcgacctctccaaggcagcttcagaaatggattatcgccct
agtcgaatggctgttgttgctaagtgtgctgaggcattcataagggaattcttcgatcag
aatcccttgagccatgttgggctagtgacaattaaagatggcatttctcatcgactgacg
gagattggagggagtccagagtcacagattaacgcattgatgggcaagcttgagtgttct
ggtgattcatctctgcagaatgctctagaacttgtcaatggttacttgaaccagattcct
tcctatggtcacaaggaagtattatttttgtactccgcactgaacacatgtgatcctggt
gatatcatggagacaatagaaaaatgcaagaaatccaaagttagatgttctgttattggg
cttgctgcagaaattttcatttgcaagcatctctgtgaagagactggtggatcctatacg
gttgcactagacgagtcccacttcaaggaattgctgcttgaacatgctcctccaccacct
gccattgcagagtatgctgcagctaatttgattaagatgggttttccacagaggggagca
gaggatcttatctccatctgctcttgccacaagaaaattaagtctggcgctgaaggttac
atatgtcccagatgcaaagttaatgtatgtgagcttccaacggagtgccgaacatgtggt
ctaacacttgttagttccccacatctggcacgatcctatcaccatctcttccctgtagcg
ccgtttgatgaggtgacgttcaaattaggtcaaaagggaggacaaaattgttttggctgc
cagcagagtctcattaacaccggtggccagtctaatatccatgtccgctgtccaaaatgc
aaccaccacttctgctttgactgtgatatttacatccatgagagcttgcataactgcccc
ggttgcgagagtcagcgcagttcatctcggtag
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