Aegilops tauschii (wheat D): 109754840
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Entry
109754840 CDS
T04345
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109754840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ats03021
]
109754840
03019 Messenger RNA biogenesis [BR:
ats03019
]
109754840
Transcription machinery [BR:
ats03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109754840
RNA polymerase I system
109754840
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
109754840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
Spt5-NGN
KOW7_SPT5
KOW6_SPT51-2
KOW4_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
109754840
NCBI-ProteinID:
XP_020169321
LinkDB
All DBs
Position
7D:complement(121954910..121963483)
Genome browser
AA seq
1052 aa
AA seq
DB search
MARRGRDDDDDEVEEEEEDEEEAYDLDDEEEDEGDDYEEEARGRGKAASRSRAPAGGGGV
RKRSRQDNFIDDSAIEDEDEDEEDDGGSRPRKKGGGGVRGFFDEEAQVDEDEEEEDEGEG
EDDFINDAGADIPDDDAGRGSRSRHSIPMRDEEEDIDEIERQVRERYARSTHIEYGEEAA
DVEQQALLPSVKDPKLWMVKCAIGHERETAICLMQKFIDRTDLQIKSVVALDHLKNYIYV
EAEKEAHVKEACKGLRNIYASAKITLVPIKEMADVLYVESKNVDLARDTWVRMKLGVYKG
DLAKVVDVDNVRQRVTVKLIPRIDLQVLASKLEGRVVAKKKTFVPPPRFFNIDEAREMHI
RVERRRDKDSGEYFEMVDGLMFKDGFLYKPVSIKSIHTQGIQPSFDELEKFKKPGDDMNG
DMSSLNTLFSNRKKGHFMKGDAVIVVKGDLKNLEGWVEKVEDTTVHIRPKISDLPKTLAF
NEKELCKYFKPGDHVKVVSGVQEGTTGMVVKVDGHVLIILSDTTKEHIRVFADHVVESSE
ITTGITRIGDYELHDLVLLDNLSFGVIIRVETEAFQVLKGVPDRPEVVLVKLREIKSKID
RRTSAKDKFNNMVATKDVVRVVEGACKGTQGPVEHIHKGILFIYDRHHLEHAGFICAKAQ
SCILVGGSTGGRRGNGMDAADARMGALRSPASILQSPGRLPPRGPQMNYGGRFGGGGRGG
RGHDALVGKCIKIKSGPYKGYRGRVKEVTGVLVRVELDSLMKIVTVKRDDIADTPTVATP
FREPRFSLGSETPMHPSRTPLHPFQTPMRDPGATPIHDGMRTPMRSRAWAPMSPPRDNWE
DGNPDTWGSSPAYQPGTPPARPYEAPTPGSGWANTPGVSYNDVPTPREGNYANAPSPYVP
STPVGQPMTPNSAAYLPGTPGGQPMTPGNAGMDIMSPVIGGEGEVNWALPDVLVNVLAAG
DEGPGVVREVLGDGTCRVALGSSGNGDIVTVLPSELEVIRPKKSDRIKIMNGTFRGFVGK
LIGIDGSDGIVKLDDTYEVKILDMVILAKLAA
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccgcggccgcgacgacgacgacgacgaggtcgaggaggaggaggaggacgag
gaggaggcctacgacctcgacgacgaggaggaggacgagggggacgactacgaggaggag
gcgaggggccggggcaaggcggcctcccgctcccgcgcccccgccggcggcggcggcgtg
cggaagagatcgcgccaggacaacttcatcgacgactcggccatcgaggacgaggacgag
gacgaggaggacgacggcgggagccgcccgaggaagaagggcggcggcggcgtgcgcggg
ttcttcgacgaggaggcgcaggtcgacgaggacgaggaggaggaggacgaaggcgaaggc
gaggatgactttatcaatgatgctggagccgacattcctgatgacgacgccggcaggggc
tccagatcacgtcactctatccctatgagggacgaagaagaggatattgatgagattgaa
cgacaagtacgggagagatatgcaagatctactcatattgagtatggagaggaagctgca
gacgttgaacagcaagctctcttgccatctgtgaaagatccaaagctttggatggtgaaa
tgtgcgattgggcatgagagggagacagcaatctgtctaatgcaaaagttcattgatagg
acagatctccagataaagtctgttgttgcgttagatcatctaaaaaattatatttatgtc
gaagcggaaaaagaggcccatgtcaaggaggcttgcaaaggtctacgaaatatctatgct
tcagcaaaaataacgttagtgccaataaaagaaatggcagatgtcctctatgttgagagt
aagaatgttgatcttgcaagggatacttgggtccgaatgaagctgggagtatataaaggt
gaccttgctaaggttgttgatgttgacaatgtacgccaaagggtaactgtgaagctcatc
cctagaatagatttacaagttttggctagtaaactggaagggagggtggttgcaaagaag
aaaacctttgtcccaccaccaagattctttaatattgatgaagccagggaaatgcacata
cgcgtggagcggaggcgggataaagactccggggaatactttgagatggttgatggcttg
atgttcaaagatggtttcctgtataaaccggtctcaataaaatcaatccacacacagggc
attcagccatcattcgatgaattggagaagttcaagaaacccggtgatgacatgaatggg
gatatgtctagcttgaatactctgttttctaataggaaaaagggacactttatgaagggt
gatgctgttattgttgttaaaggtgatctaaaaaacttagagggttgggttgagaaagta
gaggacacaactgtccacatcaggccaaaaatatccgatcttccgaaaacattagccttc
aacgagaaagagctttgcaaatatttcaaacctggagatcatgtgaaagtggtatcgggt
gtccaagagggtaccaccggcatggttgttaaagttgatgggcatgtcttaatcatttta
tcagacacaaccaaagaacacatacgtgtgtttgccgaccatgttgtggagagctctgaa
atcaccacaggaattacaagaatcggtgattatgaactacatgatcttgttcttttagac
aacttgtcatttggggttattataagagtggaaactgaagcattccaggttctgaaagga
gtgccagatagacctgaagtggtgcttgtaaaattaagagaaataaaaagcaagattgat
cggcgtacatcagcgaaagataagtttaataatatggtcgcaaccaaggatgttgtcaga
gttgttgagggagcatgtaagggaacacaaggacctgtggaacacatacataaggggata
ttgttcatatatgataggcaccaccttgaacatgcaggcttcatttgtgcaaaagcacaa
tcgtgcattcttgtcggtggatcgactggtggccgtcgtggaaatggtatggatgctgca
gatgctaggatgggtgctttgagatccccggcaagcattttgcagtctccaggaaggctg
cccccaagaggaccacaaatgaactatggtggaagatttggaggaggtggtcgtggtgga
agaggacatgacgccttggttggcaagtgtatcaaaattaaatctggtccttacaaaggg
taccgtggccgcgttaaagaggtgactggggtgcttgtgcgtgtggagcttgattcgtta
atgaagattgtcacagttaagagggatgatatcgccgacacacctactgttgcaacacca
ttccgtgaaccccgattctcgttgggtagtgaaacaccaatgcacccgtctaggacgcca
ctacatccttttcagactccaatgcgggaccctggagcaacaccgatacatgatggaatg
cgaaccccgatgcgtagtagggcctgggctcctatgagtcctccaagagataattgggaa
gatggaaatcctgatacttggggaagcagtccagcttaccagccaggaacaccaccagct
cggccatatgaagccccaacacctggatcagggtgggcaaatactccaggagttagttat
aatgacgtcccaactcctagagagggcaattatgcgaatgctccaagcccatatgtgcct
tccacacctgttggtcagccaatgacaccaaattctgctgcgtaccttcctggtacacct
ggtggtcaaccgatgactccaggcaatgctggaatggatataatgtctcctgtaataggt
ggcgagggtgaagttaactgggcattgccagatgtgttagttaatgtcttggcggcaggt
gatgaaggacctggtgtggtcagggaagtgcttggggatggaacttgccgtgtggcactt
gggtcgtcaggcaatggagacattgtgacggtccttccgtctgagctcgaggtcatcaga
ccaaagaagagtgacaggatcaagatcatgaatggtaccttccgcggatttgttggaaaa
cttataggaatagacggttctgatggcattgtgaagctcgacgacacctatgaggtcaag
atcttagatatggtgattttggccaaactggcggcttga
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