Aegilops tauschii (wheat D): 109763927
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Entry
109763927 CDS
T04345
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109763927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109763927
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109763927
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109763927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
109763927
NCBI-ProteinID:
XP_020178392
UniProt:
A0A452ZDE2
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Position
1D:408617518..408626226
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AA seq
612 aa
AA seq
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MSGSLNSNIGGDSTGRPFTSTFSGQSGSFPNFHHSGLHNIHGNLNLASLSPRNASLSGIP
SPGVQQPGGNISGSRFPSNNLPVSMSQISHGHSGISNRGGMNVGGNAVFSSSMNAIGGSA
QGLSSSMANVGNRNSAPGLTASSVLGNLGPRITNSAGNIVGGSSIGRSISSAGMSMPGIS
SRINSSGNSGSGALNIPSNRLSGMHQASPQFMNILGSSYPTPGGTLSQNQVQAGNNSFSS
SGMLHDGNSGDNSPFDINDFPQLTGRPNSAGGGQGQYGSLRKQGVSVNAIVQQNQEFSIQ
NEDFPALPGYKGNSSDYGMDLHHKDHLHENANIMQAQHFPMGRSSGFNLGGSYPPRQQQQ
QSTTSVQNGLDNIGLRPINSPSPSSNSGSYEQLIQQYHQPQTQNSLRSQTSSGQQPSKDQ
SQKSAQGKETVPDPYSLLGLLNLIKSKEPGPTALALGLDLTTLGLNLNSPDCLWKTFGSP
WSNEPAKGEPDYQIPACYSAEQPPPLQPFNFPKFHPLTLFYIFYSMPKDVAQLYAANELY
NKGWFYHREYRVWLTRASNVAPLVKTPLYERGSYICFDPNLWDTIQKDNFVLQYESVEKR
PVLPSASQNVRL
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggatcactgaattcaaatattggtggggattcaacaggaaggccattcacatca
accttttctggtcagtctggatcatttcctaatttccatcactctggcttgcataatatc
cacggaaatctcaatcttgcatcactatcgccaaggaatgcttcattgtcaggtattcca
tccccaggtgttcaacaacctgggggcaatatttctggtagccggtttccttcaaataac
cttccagtgtccatgtctcagatttctcatggccattctgggatcagcaacagaggaggt
atgaatgttggggggaatgctgtatttagtagtagcatgaatgctattggtggttcagca
caaggtttatcctcaagcatggctaatgttggtaatcgaaattctgctcctgggttgaca
gcttcttcagttttggggaacttaggcccacggataacaaattctgcgggcaatatagtg
ggtggcagcagtattggcagaagcataagctcagcaggaatgtccatgcctggtatttca
tcccgtatcaattctagcggcaactctggaagtggggctcttaatatcccatccaatcga
ctgagtggtatgcatcaagcgtcgccacagttcatgaacattcttgggagttcttatcca
acacctggaggaacgctatctcagaaccaagttcaggcaggaaacaattcttttagttct
tctggaatgctacatgacggaaactctggtgacaattctccgtttgacataaatgatttt
ccccagttaactgggcgtcctaattctgctggaggtggtcaagggcaatatgggtcactg
cgaaagcaaggagtaagtgtaaatgccattgtgcaacaaaaccaggagttcagcattcag
aatgaagattttccagctttaccaggatataaaggcaattcgtcagattatggtatggat
ttgcatcacaaggaccaccttcatgagaatgcaaatattatgcaggcacaacattttcct
atgggtagatcatctggctttaatttgggaggtagctatccaccccgccaacaacagcag
cagagcactacttcggttcaaaatggtcttgataatattgggctaaggccgataaattct
ccaagtccgtcttctaattcagggtcttatgagcaactcatccagcaataccatcaacca
cagactcagaattcacttaggtcgcagacgtcttcgggccaacagccatctaaggatcag
agtcaaaagtctgctcagggaaaagaaactgtgccagacccatatagtttacttggattg
ttgaacttaataaaatcaaaagagcctggaccaacagctcttgctttagggcttgattta
actacactagggctgaatttgaactctccagattgtctttggaagacatttggctctcca
tggtcaaatgaaccagctaaaggagaacctgattatcagatccctgcttgttattctgct
gagcaacctccaccactgcagccattcaattttccaaagtttcaccccttgacactattc
tacatcttctacagtatgccgaaggatgttgctcagttatatgccgcgaatgaactatat
aacaaagggtggttttaccatagagagtatcgtgtgtggctcacacgagcttcaaatgtg
gcgcctcttgtgaaaactccactgtatgaacgaggatcctacatttgttttgatcccaac
ctgtgggatacaattcagaaggacaactttgtgctccaatatgaatctgtagagaagaga
cctgtcctcccttccgccagccaaaatgttagattataa
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