Aegilops tauschii (wheat D): 109770371
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Entry
109770371 CDS
T04345
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03015
mRNA surveillance pathway
ats03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109770371
09123 Folding, sorting and degradation
03018 RNA degradation
109770371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109770371
03041 Spliceosome [BR:
ats03041
]
109770371
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109770371
mRNA cycle factors
Stress granule specific factors
109770371
Spliceosome [BR:
ats03041
]
Complex C
Other components
Complex C specific factors
109770371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RBD_DEAH11
RRM_Nup35
RRM_7
RRM_3
YflT
SET_assoc
BRAP2
NSRP1_N
Motif
Other DBs
NCBI-GeneID:
109770371
NCBI-ProteinID:
XP_020184663
LinkDB
All DBs
Position
7:308349819..308359147
Genome browser
AA seq
654 aa
AA seq
DB search
MMAAQVQASAAPAAGAMEGGASPAAGAAAFPATSLYVGDLDVSVQDAQLFDVFSQVGSVV
SVRVCRDVNTRMSLGYAYVNFSIPADAARALEMLNFTPVNGKPIRIMYSNRDPSSRKSGA
ANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINE
LNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLRELFGNFGPITS
VIVVRADDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKELYVGRAQKKSEREMQLKEN
FEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGF
VAFKSSEDASRALVAMNGKMVGGKPLYVALAQRKEERRARLQAQFSQMRPVMPPPVAPRM
PMYPPGVPGMGQQLFYGQPPPAFVNPQPGFGFQQHMIPGMRPGVAPMPNFVMPMVQQGQQ
PQRPSGRRAGAGGMQQPMPMGHQQMVPRGGRGGYRYASGRGMPDAAFRGVGAMVPSLYEM
GRTTPGDTGAPQQVSSGALASALVNSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLE
MDQTEVLHLIESPDALKSKVAEAMEVLRSAQQQQTNVPADQLAALSLSDGFVAS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggcgcaggttcaggcgtcggcagctccagcggctggcgcgatggagggcggc
gcgtctccggcggctggggctgcggctttcccggcgacgtccctgtacgtgggggatctg
gacgtgagtgtgcaggacgcgcagctctttgacgtcttcagccaggtcggctcggtggtg
tctgtgcgcgtgtgccgggacgtcaacaccaggatgtccctaggctacgcgtacgtcaac
ttcagcatccctgccgatgctgcaagggcattggaaatgctgaacttcactcctgttaat
gggaagcctataaggataatgtattctaaccgtgaccccagctcacgtaaaagtggtgct
gcaaatatatttatcaagaatcttgacaagtcaatagataacaaagcgctctatgacaca
ttttctgcctttggaaacattctttcatgcaaagttgctacagaaatgtctggagaatcc
aagggttatggttttgttcagtatgagcaggacgaatcagcacagaatgctatcaatgag
ctcaatgggatgcttttgaatgacaaaaaggtttatgttgggccttttgttcgtaaacag
gaaagggaaaatgtttttggcagtcccaagttcaataatgtctatgtaaagaatctatca
gaatctaccaccgaagataatctgagagaattgtttggtaattttggacctataactagt
gttattgtagttcgagccgatgatggtaaatccagatgttttggattcgtgaactttgaa
aatccggatgatgctgcacgtgctgttgaggatttgaatggcaagaaatttgatgataag
gaattatatgttggtagagctcagaagaagtctgaaagggagatgcaattgaaggaaaat
tttgagaaaagcaataaagagacagctgacaggaaccaaggcactaacttgtatttgaaa
aacttggatggtagtgttgatgacgatgagaagttaaaagaactttttgccgaatttggc
actataacttcttgcaaggttatgcgggattcaaatggggtcaacaaaggatctggtttt
gttgcatttaaatcttccgaagatgcttcacgagctcttgtggcaatgaatggtaaaatg
gttggcggtaagcctctttatgtagcgcttgcgcaacgcaaggaagaaagaagagccagg
ctgcaggcgcagttttcgcaaatgcgtcctgtgatgccaccgcctgttgctccgcgcatg
cccatgtacccccctggtgttcctggaatgggccaacagctattctatggccaaccacct
ccagcttttgttaacccacagcctggatttggtttccagcaacatatgattcctggaatg
agacctggtgttgctccaatgccaaatttcgtcatgccaatggtgcagcaaggtcagcaa
ccacaacgcccatcgggaaggcgcgcaggtgctggtggaatgcagcagccaatgccaatg
ggtcatcagcagatggttccaaggggcggccgtggtggttaccgttatgcgtctggccgt
ggcatgcctgatgctgcattccgtggtgttggagctatggtgccatcgctgtatgagatg
ggaaggacgactcctggtgacactggagcaccgcagcaagtttctagtggagcattagca
tctgcacttgttaactctccgccggagcagcaacgactgatgcttggtgaaagcttgtat
ccactcgttgatcagctggagcatgaccaggctgccaaggttaccggtatgcttctggag
atggaccagactgaggttcttcatctaatcgagtcacctgatgctctgaagtctaaggtc
gctgaagctatggaggttctccgcagtgctcagcagcagcagaccaatgttccagctgat
cagctggctgctctttcgctgagcgatggctttgttgcttcttag
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