Aegilops tauschii (wheat D): 109771825
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Entry
109771825 CDS
T04345
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109771825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ats03041
]
109771825
Enzymes [BR:
ats01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109771825
Spliceosome [BR:
ats03041
]
Complex C
Other components
Step II factors
109771825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
AAA_16
TsaE
ABC_tran
Flavi_DEAD
Sigma54_activ_2
PhoH
Motif
Other DBs
NCBI-GeneID:
109771825
NCBI-ProteinID:
XP_020186106
UniProt:
A0A453HWX6
LinkDB
All DBs
Position
4:147347634..147352450
Genome browser
AA seq
1235 aa
AA seq
DB search
MAPPAAEGPGDDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPSVADFDA
KLKANGADLPDYFVRTLLTIIHAILPPPSHNPSSAASQSNSKYRALSRPDDADRARELRL
ELERDANAAAATTPAPSRDRSRDDRSRDRDHDPKRDEPRGRDRDHDRSRDRDRGRGDRSH
NRDRAHDDRGQDRNHDRGREHDNGWDRDRDRRRDRVREGDRDGNGRRDQDRLQQRDRDTG
KAHGRSRRYVDEEEGQQERAGRRKMENTMTNSSGEPELYQVYRGRVTRVMDTGCFVKLED
VRGGCEGLVHVSQMASRRVANAKEVVKRDQEVFVKVVSVKGDKLSLSLRDVDQDTGKDLL
PMQRGVEDAPRTNPSVGSAAAAGPGRRLGLSGIVITEEDEVAPISRRPLKRMSSPERWEA
KQLIASGVLDVRDYPQFDEDGDGMLYQEEGAEEELEIELNEDEPEFLQGQSRFSIDMSPV
KIFKNPEGSLSRAAALQTALIKERREVREQEQRAMLDSIPKDLNRPWEDPMPDTGERHLA
QELRGVGLSAYDMPEWKKEAYGKALTFGQRSKLSIQDQRQTLPIYKLKKELIQAVHDNQV
LVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG
YAIRFEDCTGPETVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHTDVLFGLLKQ
LVKRRPDMRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALIT
VLQIHLTEPEGDILVFLTGQEEIDHACQCLYERMKGLGKDVPELIILPVYSALPSEMQSK
IFEPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKINVYNSKQGLDSLVITPISQAS
AKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGSTVLNMKAMGINDLLSF
DFMDPPAPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSD
EILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCF
ENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVAAGKNFTKIRKAITAGFFFHAARKDPQEG
YRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFYKG
ADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccggcggcggagggtcccggcgacgacgggctccgaaagttggagtacctg
tcgctcgtctccaaggtctgctcggagctggagacgcacatcggtgtaggcgacaaggtt
ctggctgagttcattaccgagctcggccgcgacgccccctcggtcgccgatttcgacgcc
aagctcaaggccaacggcgccgacctccccgactacttcgtccgcacgctcctcaccatc
atccacgccatcctcccgccgccctcccataaccctagctccgccgcctcgcagtccaac
tccaagtaccgcgcgctctcgcgcccggacgacgcagatcgcgcccgcgagctccgcctc
gagcttgagcgtgatgccaatgccgcagcggcgaccacccctgccccttccagggaccgc
agtcgcgatgaccgctctcgggaccgtgaccatgaccccaagcgtgatgaaccacgcgga
cgggatcgtgaccatgaccgcagtcgtgacagagaccgcgggcgtggtgatcgcagccat
aaccgtgaccgtgcacatgatgaccgtggccaggatcgtaaccatgaccgaggtcgtgaa
catgataatggctgggacagggatcgagaccgtcgtcgcgacagagtccgggagggagat
cgggatggtaatggtcggagggatcaggaccgcctccagcaaagggacagggatacaggc
aaggcccatggaaggagcaggaggtatgtggatgaggaggagggacagcaggaaagggct
ggaagaaggaagatggagaataccatgacaaattcaagtggcgagcctgagctttaccag
gtgtaccgggggagggtgacccgtgtaatggacaccggttgctttgtcaagcttgaggat
gttcgtggtggctgtgaggggcttgttcatgtatcgcagatggcaagcagacgggtagcc
aatgcaaaggaggtggtgaagcgcgatcaggaggtgttcgtgaaggtagtttcggtaaag
ggagataagttgagtctctcactgagagatgtggatcaggatacaggaaaggaccttctg
ccaatgcagcgtggtgtggaggatgcaccaaggactaacccatctgttggtagtgctgct
gctgctgggcctggaaggaggttgggtctatcggggattgtgattacagaggaggatgag
gttgcacccatctcgcggcgtcccctcaagcggatgagctcaccagagaggtgggaggcg
aagcagctaattgcttcgggtgttcttgatgtgagggattacccacagtttgatgaggat
ggcgatggaatgttgtatcaggaggaaggcgcagaggaggagttggagattgagcttaat
gaggatgaaccagagttcttgcagggacagagcagattctcaattgacatgtcacctgtt
aagattttcaagaatccagagggttcattaagtcgagcagcagctctccagactgctctc
atcaaggagcgccgtgaggttagagaacaagagcagagagcaatgctggactcgataccc
aaggatctgaataggccatgggaggacccaatgcccgacacaggcgagcgacaccttgca
caggagcttagaggtgttggtctatcagcttatgacatgccagaatggaagaaggaagca
tatggaaaagctttaacgtttgggcaaaggtcaaagctttcaatacaagatcagaggcaa
actcttccaatatacaagttgaagaaagagttgattcaagctgtgcatgataatcaagtt
ttagttgttatcggagaaactggctctggaaagacaacgcaggtgacacaatatttggct
gaagccggttataccacaaggggtaaaattggttgtactcaacctcgtagggtggctgca
atgtctgttgcaaagagagtggcagaagaatttggctgtcgactgggagaagaagttggt
tatgccattcgctttgaggattgcactggcccagaaactgtgataaaatacatgaccgat
ggaatgcttctgcgtgaaattttagttgatgagaacctttcccagtattcagtagtcatg
cttgatgaagcgcatgaaaggaccatccacacagatgttctcttcggtttgctgaagcag
cttgttaagcgtagacctgacatgaggcttattgttacttctgctacccttgatgctgaa
aagttctctgggtatttcttcaactgcaacatcttcacaattccgggaagaacattccca
gtggagatactctacaccaaacaaccagaaagtgactacttggatgctgcattgattacc
gtgctgcagatccacttgacagagccagagggtgatatcctcgttttcttgactggtcaa
gaggagattgatcatgcctgtcaatgtttatatgagaggatgaaagggctgggaaaggat
gttcctgagctcataattttgcctgtgtatagcgctctgcctagtgaaatgcagtcaaag
atctttgagccagctccacctgggaagaggaaggtggtcgtagccaccaatattgctgaa
gcttctttaaccattgatggcatatattatgtcatcgaccctggcttcgccaaaatcaat
gtttataattcaaaacaagggcttgattcattggtcatcactccaatctcacaagcatcg
gcaaaacaaagagcagggcgtgctggccgtactggaccaggcaaatgttatcgtctatac
actgaaagtgcttaccgcaatgaaatgtcaccaacgacgattccagaaattcaaaggatc
aatttgggttctacagttcttaatatgaaggcaatggggataaatgacctactatcgttt
gattttatggaccccccagcaccccaagcacttatctctgctatggaacagctttacagc
cttggcgctcttgatgaggagggccttcttaccaaactgggcagaaaaatggctgaattt
ccactggatccaccactttcaaagatgctactagctagcgtcgaccttggatgcagtgat
gagatactgactattatagcgatgattcaaacggggaatattttctataggcctagagaa
aaacaggctcaagctgatcagaaaagggccaaatttttccagccagagggagatcatctt
actctacttgctgtatatgaggcttggaaagcaaagaacttttcagggccctggtgcttt
gagaactttgttcagtcaagatcgctaaggagggcacaagatgtcagaaagcagcttcta
actatcatggacagatataagttggatgttgttgctgctgggaagaacttcacgaaaata
aggaaagcaatcactgccggcttctttttccatgctgccaggaaagatccccaggaagga
tacagaaccttggtggagaaccagccagtgtacattcacccaagcagtgcgctgttccag
cgccaaccagattgggtcatttaccacgagcttgtaatgacgaccaaggagtatatgagg
gaggtgaccgtagttgacccgaaatggttagtggagttagcgccaagattctacaagggc
gcagatccaaccaagatgagcaagaggaagcgacaggaaaggattgagcctctgtacgac
aggtaccacgagcccaactcatggcgtctcagcaagcgccgagcttga
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integrated database retrieval system
