Aegilops tauschii (wheat D): 109772443
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Entry
109772443 CDS
T04345
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109772443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109772443
03012 Translation factors [BR:
ats03012
]
109772443
Enzymes [BR:
ats01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109772443
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109772443
Translation factors [BR:
ats03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109772443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
R3H
HA2_C
HA2_N
AAA_19
Ank_2
Ank_5
AAA_22
nSTAND3
ATPase
AAA_16
ResIII
Ank
ABC_tran
AAA_23
Rad17
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
109772443
NCBI-ProteinID:
XP_020186716
LinkDB
All DBs
Position
3:427031691..427042618
Genome browser
AA seq
1274 aa
AA seq
DB search
MARISVHPNLSLHHRPLLPQIAPPPRCPRRFPPGPPHQHTKGKATAAGSLQSGTRTGRRA
APNAAAAAPPPPPLRDDGMGRKGPKGAKTNAAALTKAALAAMSEETTVRITTVLEDFRAS
DAQVHTFEPSLTNQERAAVHAMCKKMGMISKSKGYGERRCLSVYKTKNTQGAVKEEGPSK
LGFSEEARQILLDLFTHYPPDDAELNGDAVKNPGDKAAKIQWKTDTAFSRPAMQKHDIAK
KVKMLTSKLNDTRQLRKIGEGRSKLPIASFKDHISSTLENHQVVLISGETGCGKTTQVPQ
YILDHVWGKGESCKIICTQPRRISAMSVAERISVERGETVGDTVGYKIRLESKGGKNSSI
MFCTNGVLLRVLIGRVTNISKRQRAADDVIMGITHIIVDEIHERDRFSDFMLAILRDLLP
MYPHLHLVLMSATIDAERFSQYFNGCPVIQVPGHTYPVKTFYLEDVLSILQSVGDNHLNP
ETNGLGLDSVLTDDYKSSMDEAISIALVSDEFDPLIELISIEQNPEIFNYQHSETGVTPL
MVFARKGQLGDVCMLLSFGVDCSARDHDGKSALDWAQQENQVEAYEVIKKHMDCSPAKLP
EENELLKKYLATINPEHIDTVLIERLLRKICTDSNEGAILVFLPGWEDINQTRERLLASS
FRDSSKFLVLSLHSMIPSSEQKKVFKRAPAGVRKIILSTNIAETAVTIDDVVFVIDSGRM
KEKSYDPYNNVSTLHTSWVSRANARQREGRAGRCQPGTCYHLYSRFRAASLPEFQIPEIK
RMPIEELCLQVKLLDPNSKIADFLKKTLDPPVTETVKNAITVLQDLGALTQNEQLTDLGE
KLGSLPVHPSTSKMLLFGILMNCLDPALTLACAADYRDPFFLPMAPDERKRAAAAKVELA
SLYGGYSDQLAVVAAFDCWTCAKVNGQEALFCSKYFVASNTMNMLSSMRKQLHSELTQRG
FLPADTSACSLNAKVPGIISAVLVAGAYPMVGRLLPPRKNARRAVLETASGAKVRLHPHS
SNFNLSFNKSSGNPLMVFDEITRGDGGMYVKNCSVVGSYPLLLLATEIAVAPPDDVSDED
DEGSSGDEAGKSTLGQQKEEIMSSPDNTVSVVVDRWLRFDATALDVAQIYCLRERLASAI
LFKVKHPQDVLPPALGATMYAIACILSYDGLPGNLATKHGSGQSSTDASGSAEGRKVGFI
LPGGFLMSLLSEVPPNAPHHQKSSNHPGGGSGHIRSSRAPAGRFNQSQQHPGRNSSGPGS
SASQSFKRQRDAAR
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcatatcggtccatccaaacctctccctgcaccaccgcccgctcctcccacag
atcgcaccgccaccacgttgccctagaaggtttccacccggtccaccgcatcagcacaca
aagggcaaagcgaccgcagcgggaagcctccagagcgggacccgaaccggccgccgcgcc
gccccgaacgcagccgccgccgcgccgcccccgcccccgctccgcgacgacgggatgggg
cgaaaggggcccaagggggccaagacgaacgccgccgccctcacgaaggccgccctggcc
gccatgagcgaggagacgacggtgcgcatcaccacggtgctcgaggacttccgcgcctcc
gacgcccaagtgcacacattcgaacctagtcttaccaatcaagagcgggcagcagtccat
gctatgtgtaaaaagatgggcatgatatcaaagagtaaagggtatggggaacggcgatgc
ctttctgtttacaaaacaaaaaacacgcagggggctgttaaagaagaaggccctagcaaa
cttggattttccgaagaagcaagacagattttgctagatctgtttacacactatcctcct
gatgatgctgaattgaatggtgacgctgtcaagaatcctggcgataaggctgctaaaatt
caatggaagacagatacggccttttccaggccagctatgcagaaacatgatatagcaaag
aaggtcaagatgcttacgtctaaattaaatgatactagacagttgaggaagatcggtgaa
ggcagatccaaacttcctattgcatccttcaaagatcacatttcttctaccctagaaaat
caccaggtggttcttatttctggagaaacaggctgcggtaaaactacccaggttccacaa
tatatcttagatcatgtgtggggcaagggtgaatcatgtaagatcatttgtactcaacct
cggcggatatcagctatgtcagttgccgaacgaatctctgttgaaagaggagagactgtt
ggtgacacagttgggtacaagatacgcttggagtcgaagggagggaagaattcgtcaatc
atgttctgcacaaatggtgttctcttgagggtgttgataggcagagtaactaacatttca
aagaggcaacgcgcggctgatgatgtaattatggggataacgcacattattgtggatgaa
atccatgaaagggataggttttccgatttcatgctggctatcttgagagatttgctgccg
atgtatcctcatcttcatttggtgctcatgagtgcaacgattgatgctgagcggttttca
caatatttcaacggatgcccggttatccaagtcccaggccatacctatccggtcaaaact
ttctatttggaggatgtgctttctattctgcaatctgtaggtgataatcatcttaatcct
gaaacaaatggtctgggacttgacagtgtgctaaccgatgattacaaaagctcaatggat
gaagcaattagcatagctttagtcagtgatgaatttgatcctctcattgagcttatttct
atagagcagaacccagaaatcttcaactaccaacattcagagactggtgtgacacctttg
atggtttttgccaggaagggtcagcttggggatgtctgtatgcttctatcatttggtgtg
gattgttctgcacgggatcatgatggaaaatctgcattagattgggcacagcaagagaat
caggtagaggcttatgaagttattaagaaacatatggattgtagtcctgcaaaattacct
gaagaaaacgagctgcttaagaaatacttggcaactatcaacccagaacacattgatact
gtgctgatagaacgcttgcttagaaaaatatgtactgactccaatgaaggagctatctta
gtcttccttcctggttgggaagatataaatcaaacacgggagaggttacttgcttcttcc
tttcgggattcttcaaaatttcttgtactgtcacttcattccatgatcccatcttcagag
cagaaaaaggttttcaaacgtgcaccggcaggggttcgtaaaattattctctcaaccaac
atagcggagactgcagtaacaattgatgatgttgtatttgttatagatagtgggaggatg
aaagagaaaagctatgatccatacaataatgtgtctacacttcatacttcttgggtatct
cgagctaatgcaagacagcgtgaaggacgtgccggtcgttgtcagccaggaacttgctat
catctttactctagatttcgagcagcctcattgccagaattccaaattcctgaaattaag
aggatgcctattgaagagctgtgtttgcaggtcaaactgcttgatccaaactctaaaata
gcagacttcttaaagaagaccttggatcctccagttacagagactgtaaaaaatgctatt
actgtgcttcaggatcttggtgctttaactcaaaatgaacagttgacagatttgggtgaa
aagttaggttctctcccggtccatccatccacaagcaagatgctcctgtttggtatattg
atgaactgccttgatcctgcattgacattggcatgcgcagcagactatagagatcctttc
ttccttcctatggctccggatgagagaaaaagggctgctgcagccaaggttgagcttgct
tcattatatggtggatatagtgaccagcttgctgttgtagcagcatttgattgttggacg
tgtgccaaagtgaatggacaagaagctttgttttgttcaaagtacttcgtagcttcaaac
accatgaatatgttgtctagtatgaggaaacaacttcacagtgaactaactcaaagagga
tttcttcctgctgatacatctgcctgcagcttgaatgctaaagttccaggtatcattagt
gctgtccttgtggctggcgcttacccaatggtaggaagattgctccctcctcgcaaaaat
gctagaagggcagttttggaaacagcaagtggtgccaaagttcgattacacccgcattct
tccaactttaacttgtcatttaataaatcctctgggaatccactaatggtatttgatgaa
atcactcgaggtgatggtggaatgtatgtaaagaactgttcagttgttggatcatatcct
ttacttctgcttgctacagaaatagctgttgctccacctgatgatgtaagtgatgaggat
gatgaaggttccagtggggatgaagcgggaaaaagcactctgggacaacaaaaggaagag
attatgtcttctcccgacaacactgtttcagttgttgttgatcgttggcttcgatttgat
gctactgctctggatgttgctcaaatatactgcctacgagaacgcctagcatctgctatt
cttttcaaagtgaaacatccacaggatgttctcccgcctgctcttggagcaacgatgtat
gcgattgcttgtatcctatcgtatgatggcttgcctggtaatttggcaacaaaacatggt
tcaggtcagagctcaacagatgctagcggatcagctgagggaaggaaagttggttttatt
ctgcctggcggtttccttatgtcattgctatcggaggtaccgcccaatgcacctcatcat
cagaagtcatctaaccatccagggggtggttcagggcatattaggtcatcgagggccccc
gctggtagatttaatcagtcgcagcagcatcctggccgcaacagctctggaccagggagt
tcagcatcacaatctttcaaaagacagcgggacgctgcacggtga
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