KEGG   Aegilops tauschii (wheat D): 109773420
Entry
109773420         CDS       T04345                                 
Name
(RefSeq) protein PAT1 homolog 1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
ats  Aegilops tauschii (wheat D)
Pathway
ats03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ats00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109773420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ats03019]
    109773420
Messenger RNA biogenesis [BR:ats03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109773420
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     109773420
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 109773420
NCBI-ProteinID: XP_020187700
UniProt: A0A452ZIS7
LinkDB
Position
1
AA seq 814 aa
MRGLRADAGGSGGGSSSSASTAESSRFDSGQYSFFGKAPLEGLELGGSMADDVGLDSGYG
GGFGGHDDGAYQLSPVGEEIDCMSNLSEIDDLASTFAKLNRSIGGTRNPGVIGDRRSISR
ESSLTTDWAQEAEFSNWVDHDILDSDEFQDSKQLCPQPQYLPQFGESKPLSRTSSYPLEP
LQHRSSEPILGHRSPSFTSYPPPGGGGLSYPAQGLTRHSSIPSPGAGYQMGSPSSSLTGS
PYNMTGLPHGLRLGRSMSYTSADLYANNLLQNEWPNQAGSHAFEHLNLQPSLLQQQLSFP
GSSMSSLLFSQQQQQQQRLSLVQPPHHNYLNMQPHLYHHHSPEIIGRFDHIPSVPSPRDK
RSRSGRGKHSIRFSQQQSDTASQNVDTGGTKFRSKYMSSEEIDTILRMQHSGSHSSDPYV
DDYYHQACIAKRSVNSQKKVNFSPASIKDSHSKSRSGGDQHSYLKVDSLGRVSFSSIRRP
RPLLEVDIPASGDGHKSSTRPLEKEPMLAARITVEDGICLLLDVNDIDRVLQSSQAQDSS
FQLRRRRQVLLEGLATSLELVDPFGPNKPGNSSGLAPTDDLIFLRIVSLPKGRKLLARYL
RLLAPGSELTRIVCMAIFRHLRSLFGGLPSDSGAAETTVSLAKTVSSCVHHMELSALSAC
LAAVVCSSQQPPLRPLGSSAGDGAALIIKSVLDRATELLADPHSAANYSRSTRSLWQASF
DAFFGLLTKYCDSKYGSILQRFSMQGSNSMAGPEASKAVSREMPVELLRASLPHTSEEQR
QMLLDFARKSMPVIGYNHSGARGGHSTTSKPVPG
NT seq 2445 nt   +upstreamnt  +downstreamnt
atgaggggcctccgggcggacgccggcggcagcggcggtggctcatcctcgtcggcctcc
accgcagagagctcgcgcttcgactcggggcagtactccttcttcggcaaggcgccgctg
gaggggctggagctcggcggcagcatggcggatgacgtcggcctggacagcggctatggc
ggcggcttcggtgggcacgatgatggggcataccagctgtctcctgtgggggaagagatt
gattgcatgagtaacttgtctgaaattgatgatcttgcaagcacattcgcaaagttgaac
cgaagtattggtggaacaaggaatcctggtgttattggtgatagacgatcaatttccagg
gaaagttctttgactaccgactgggcccaggaagcagagttctcgaattgggtggatcat
gatatactggacagcgatgaatttcaagacagcaaacaattgtgtccacagccacagtat
ttgcctcagtttggagagtcaaaaccattgagccgaacatcatcctatcccctggagcca
ctacaacaccgctccagtgaacctattctgggacatagatctccttcatttacatcctat
cctccaccaggtggtggtggattatcttatcctgcacaaggtcttacgcggcactcgagc
attccatcacctggtgctggttaccaaatgggttctccaagttcgtcacttactggttct
ccatataacatgactggtctacctcatggactgcggttggggcgaagcatgtcttacact
tctgcagatctatacgcaaacaacttgctgcaaaacgaatggccaaatcaagctggttcg
catgcttttgagcatcttaatctacagcccagtttattgcagcaacaactatcttttccg
ggcagttcaatgtcttctttgctattttctcagcagcaacagcagcagcagaggttgtca
ctagttcaaccgcctcatcacaattacctaaacatgcagcctcacttgtatcaccatcat
tccccagagataataggcaggtttgatcatattcctagtgtgccttcaccaagggacaag
agatcaaggtcaggaagaggaaaacacagtatacgcttttctcaacaacaatctgataca
gctagccagaatgttgacactggaggaacaaaattcagatcaaagtatatgtcatccgaa
gagattgatactattttaagaatgcagcactctggcagtcacagcagtgatccttacgtc
gatgactactaccaccaagcttgtatagccaaaagatctgtcaattctcagaagaaggtg
aatttctcccccgcgtcaataaaagactcccactcaaagtctaggtctggtggtgatcag
cattcatacctgaaggttgattctcttggaagagtgtcattctcttccatacgtaggcct
cgccctcttcttgaagttgatattcctgcatctggtgatggtcacaagtcatctacgagg
ccactggagaaagagccaatgctggcagccagaattaccgttgaggatggtatatgtctt
cttctagatgtaaatgatattgaccgtgtgttacagtctagccaggcacaggacagcagc
ttccaactgaggcgaaggcggcaggtcctccttgaaggcttagctacatcacttgagctt
gtcgacccttttggccccaacaaacctggcaattcatctggattggccccgacggatgac
cttatttttctccgcattgtttctctccctaaaggacgcaagctcttggcacggtatctc
cgacttcttgcccctggaagtgagctgacccgcatagtttgcatggctatctttcggcat
cttaggagcttgtttgggggtttgccgtcagattctggtgctgcagaaacaacagttagt
cttgccaagaccgtgtcctcctgcgtgcatcacatggagctcagtgcccttagcgcctgc
ctcgccgctgttgtctgctcatcgcaacagccacctctccgccctcttggcagctcagct
ggtgatggtgctgctctaatcatcaaatcagtactggacagagcaactgagctactggcc
gacccccattctgcagccaactacagcaggtcaacccgttcgctttggcaggcgtcgttc
gatgccttctttgggcttctgacgaaatactgcgacagcaagtacgggagcattctgcag
aggttcagcatgcagggatccaactcaatggctggacctgaagcctcgaaagccgtcagc
agggagatgcccgtcgagctactgcgtgcaagccttccgcacaccagcgaagaacaacgc
cagatgcttcttgactttgctcggaaatccatgcccgtgatcggctacaaccactccggc
gctaggggcgggcattctactacttccaaacctgttcccggttaa

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