Aegilops tauschii (wheat D): 109777367
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Entry
109777367 CDS
T04345
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109777367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109777367
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109777367
mRNA degradation factors
5'-3' decay
Decapping complex
109777367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
109777367
NCBI-ProteinID:
XP_020191599
UniProt:
A0A453FLI4
LinkDB
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Position
3:427962733..427968874
Genome browser
AA seq
809 aa
AA seq
DB search
MPGAEADGGAGAGASSSSTADSFDAGQYAFFGKEPRDGLELGCLEADGGHGNGGGFSGPE
DGGLYRLSSVGEEIDNLSNLSDVDDLASTFAKLNRTVSGGTRNPGVIGDRRSISRGSSLT
VDWTEDVEFPNYQDILENEEFQEGKRWWSSQSHSLMQQGDNKPLSRTSSYPQQPLQHRSS
EPITGPKSPPLTSFPPPGGRSPHPAQGLTRHGSIPSFGAGIQMGSPSMPLPGSPYHMVGL
PHGLPYGGSMPFGGPNMHVSNPMQNDWSNQANLFTGEHLNLLPNLLQKQISLPNSPMSSL
LFSQQQQRLAQLQPSHHHNYLNLPPHLFYHHHPPEIPGRFESATSLPSSRDKRSRSGRGK
HSLRFSQPPSDTTGSQNGESGGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQA
CMAKKGSSSKQKTNFSPTSVKDLPSKSRSSGDQHAYLQVDALGRVSFSSIRRPRSLLEVD
NPLSGEGPHDQKSSVRSLEKEPMVAARVTVEDAIGLLLEVDDIDRLLQSSQAQENSFQLR
RRRQVLLEGLAASLQLADPLGPSKSANSSGLAPKDDIVFLRIVSLPKGRKLLARYIRLIV
PGSELTRIVCMAIFRHLRFLFGGLPSDSSAAETTVALAKTVSTCAHHMELGALSACLAAV
VCSSEQPPLRPLGSSAGDGASLIIKSVLDRATELLTDQRAVSSYTPSNRALWQASFDAFF
GLLTKYCLSKYESILQMFVMQASGSVIGSEASQATSREMPVELLRASLPHTNEQQRQMLL
DFAQRTTPASSFNPTGASGGHISSESVPG
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcgctgaggccgacggcggcgccggcgccggcgcttcctcctcctccaccgca
gatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgcgacgggctcgag
ctaggttgcttggaggctgatggtggccatggcaatggcggtggattcagcgggccagag
gatggtggcttgtaccggctctcttcggtgggagaagagattgacaatctaagtaacttg
tcggacgtcgatgatcttgcgagtacttttgctaagttgaaccgaaccgttagtggtgga
acacggaatcctggtgttatcggtgacagacgatccatttcaagaggaagttctttaact
gttgattggactgaggatgtcgagtttcccaattatcaggatatattagaaaatgaggaa
ttccaggaaggtaaaagatggtggtcatcgcagtcacattctttgatgcagcaaggggac
aacaagccgttaagtcgaacatcttcctatcctcagcagccactgcagcaccgttccagt
gaacctatcacaggaccaaagtctcctccgttaacctcgtttccgccaccaggtggtaga
tcaccacatcctgctcaaggtcttacacgtcatgggagcattccatcgtttggagctggg
atacagatgggttctccgagcatgccactgccaggttccccgtatcatatggttgggtta
cctcatggactaccatatggtggaagcatgccctttggtggtcctaatatgcatgtaagc
aatccaatgcaaaatgactggtcaaaccaagccaacctgttcactggggagcaccttaat
ctactgccaaacttgttacagaaacaaatatcgcttccgaatagcccaatgtcatcactg
ctattctctcagcaacagcagagattggcacagctccaaccatcccaccatcataattac
ctaaatttaccaccccacctattctaccatcatcaccccccagagataccaggcaggttt
gaatctgctaccagtcttccttcatcaagagacaagagatcaagatcaggaaggggaaaa
cacagtttacgtttttctcaaccaccatctgatactactggtagtcagaacggtgagagt
ggtggactgaagtttagatccaagtacatgtcatctgaagagattgagtctattctaaga
atgcagcactcggcaagtcacagcagtgatccttacgttgttgattattatcatcaagct
tgcatggcgaaaaagggttccagttctaagcaaaagaccaatttctccccaacatcagtt
aaagacttgccctccaagtccagatcaagtggtgaccagcatgcatatcttcaggtcgat
gctcttgggagagtttctttctcttccattcgcaggccccggtctcttcttgaagttgac
aatcctttgtcaggtgagggtcctcatgatcagaagtcttccgtgaggtccctggagaaa
gaacctatggtagcagccagggtcactgttgaagatgccattggtcttcttcttgaggtg
gatgatattgacaggctcctgcagtctagccaggcacaggagaacagcttccagctgagg
cgaaggcgacaagttctccttgaaggtctagccgcgtcacttcagcttgctgaccctctt
gggcccagcaaatctgccaattcatctggtttagcccctaaggatgatattgtctttctt
cgcattgtttctcttcccaaaggacgtaagcttctggctcgttatatccggcttattgtc
cctggaagcgagttgaccaggattgtgtgcatggctattttccgacacctgaggttcttg
tttgggggtttaccatcagattcaagtgcagcagagacaacagttgctctggcaaagact
gtttcgacttgtgctcaccatatggagctcggtgctcttagtgcttgccttgctgcagtt
gtctgttcatctgagcaaccacctctccgtcctcttggtagctctgctggtgacggggct
tctcttattatcaagtcagtactggaccgagcaactgagttgctgactgatcagcgtgcc
gtatccagctataccccgtcaaaccgagctctctggcaggcatcgtttgatgctttcttt
gggcttctgacaaaatactgcctcagtaagtatgaaagtattctgcagatgtttgtgatg
caggcatcaggctctgtgattggatctgaagcctcccaagcaaccagcagggagatgcca
gtagagttgctacgtgcaagcctcccccacacaaacgagcagcaacgccagatgctgctt
gatttcgctcagagaaccacgcctgccagcagttttaatcccactggtgctagcggtgga
cacatctcttctgaatcggttcctggttaa
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