Aegilops tauschii (wheat D): 109778379
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Entry
109778379 CDS
T04345
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109778379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ats03041
]
109778379
03009 Ribosome biogenesis [BR:
ats03009
]
109778379
Enzymes [BR:
ats01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109778379
Spliceosome [BR:
ats03041
]
Complex A
U2 snRNP components
U2 related factors
109778379
Complex B
109778379
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109778379
Ribosome biogenesis [BR:
ats03009
]
Eukaryotic type
90S particles
Helicases
109778379
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
nSTAND3
SRP54
T2SSE
AAA_30
AAA_7
TrwB_AAD_bind
AAA_29
Motif
Other DBs
NCBI-GeneID:
109778379
NCBI-ProteinID:
XP_020192524
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAGINGAAAAAAANPSINRWNGRPYSARYLEILEK
RRTLPVWQQKDEFLRVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYK
VIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGR
LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEVNNM
GDQVGPVKVVPLYSTLPPAMQQKIFDPAPPPLKEGGPAGRKIVVSTNIAETSLTIDGIVY
VIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNGDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL
TSLGEMMSEFPLDPQMSKMLVISPRYNCSNEILSISAMLSVPNCFLRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNNEDPTWCYENFVNARAMKSADNVRQQLVRIMTRFNLKM
CSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVI
YNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRERESAASR
N
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtgagcctcttcgacgttgtcgacgagacctccgta
tccgcgaagctcggccgcgccggcatcaatggtgccgccgccgccgccgcggccaatccg
tccatcaaccggtggaacggccggccctactcggcgcgctacctagagatcctcgagaag
cgccgcacgctccccgtgtggcagcagaaggacgagttcctccgcgtcctccgcgacaac
cagaccctcatccttgtcggagaaaccggaagtggcaagaccactcagatcccccaattt
gtgctcgaggctgaaggtttgagcaaccgttctatggttgcctgcacccagccgcgtagg
gttgctgcaatgtcggtctctcggcgtgtcgcggaggagatggatgtcacaatcggggag
gaagttggttacagtatccgattcgaagattgcagcagtcacaaaactgttctcaaatat
ttgacagatggtatgcttctgagagaagcaatggcagacccacttttagagaggtacaag
gtgattgttcttgacgaggctcatgagcgcacgttggcaacggatgttctgtttgggctt
ctgaaggaagttctaaagaacaggcctgacttgaagcttgttgttatgagtgctactctt
gaggcagagaagtttcagggttatttcagtggtgcaccattgatgaaagttcctggtaga
cttcatccggttgagatcttctatactcaggaaccagaaagggactatctagaagctgct
atcaggacagttgtgcagatacatatgtgtgaacctgctggtgatatccttgtattcctt
actggagaagaggagattgaggatgcgtgtcggaaaataaacaaggaagttaataacatg
ggtgatcaggttggcccagttaaagtcgtgccgttgtactctactctcccccctgcaatg
cagcagaagatttttgaccctgctccacctccattgaaagagggaggtcctgctggaagg
aaaattgttgtgtccacaaacattgctgagacatccctaaccatcgatggtatagtgtat
gttatagatccagggttttccaaacagaaggtttacaatccaaggataagggtggaatcc
cttttggtgtctccaatttccaaggcaagtgcgcatcagagagctggtcgtgctggaaga
acacagcctgggaagtgcttcaggttgtacacagagaagagttttaatggtgatttacag
cctcagacctacccagaaattcttcggtcaaacctggcgaatacagttcttactctgaag
aagcttggaattgatgatttggtgcattttgacttcatggatcctcctgcacccgaaact
ctaatgagggccttggaagttctgaactacttgggggcactcgacgatgaaggcaaccta
acatctttaggtgaaatgatgagtgagttccccttagacccacagatgtcaaagatgctt
gtcatcagtccaaggtacaactgttcaaatgagatcctctcaatatctgccatgctatca
gtacccaattgctttctccggcctagggaggcacaaaaggctgctgatgaggcgaaggct
cgatttgggcacatcgatggggatcatctgacacttttgaacgtgtaccatgcatacaag
caaaacaatgaggatcctacatggtgttatgagaattttgtcaatgcccgggcgatgaag
tctgctgataatgttagacaacaacttgtccgcatcatgaccagattcaacctcaagatg
tgcagtacagacttcaacagtcgtgagtactatgtcaacatcaggaaagcaatgctttca
gggtactttatgcaggttgctcatctggagcgaactgggcattacttaaccgtaaaggat
aatcaggttgtccatcttcatccctcgaattgcatggaccataagccggagtgggtcatc
tacaatgaatatgttttgaccaccaggaatttcatccgcacagtcaccgatatccgtgga
gagtggcttatcgatatagctccacagtactatgatctgaccaatttcccatcatgcgag
gccaagcgtgttcttgagaggctacacaataagagggagagggaaagtgctgctagtagg
aactga
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integrated database retrieval system
