Aegilops tauschii (wheat D): 109780020
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Entry
109780020 CDS
T04345
Name
(RefSeq) vacuolar sorting protein 39 isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109780020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ats04131
]
109780020
Membrane trafficking [BR:
ats04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109780020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
AlaDh_PNT_N
DUF4837
Motif
Other DBs
NCBI-GeneID:
109780020
NCBI-ProteinID:
XP_020194202
UniProt:
A0A453H826
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All DBs
Position
4:complement(29346216..29356556)
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AA seq
985 aa
AA seq
DB search
MVHSAYDAVELVSGVPGRIEAVASHGGKLLVAASDCSLRIYSAPAPADGGEIRRDGPYAL
ERQEQRLWRRAPSAMEASASRDLLLSLSEWVALHRLPGLETVAVVSKTKGANVFAWDDRR
GLLAAGRQKRLTVFRLDSGREFVEVKEFSVPDIVKSMAWCGDNICLGIRRDYMIINSVTG
ALTEVFSSGRIAPPLVVPLPTGELLLGKDNIGVFVDQNGKLIHDGRIIWSDTPASVVVHK
PYAVARLPRHVEIRSLRAPSALVQTVVLRDVQKLVQTDNYILASLSNSVYGLLPVPIGAQ
IVQLTASGEFEDALALCKLLPPEDSNLRAAKESSIHMRYGHFLFDNGSYEEAMEQFSDAH
VDITYVLSLYPYLVLPQTHIIGEHDKLQDLQELARESSDATDEMEAYSLQLHDSDDKSPL
ENKKMSHNALIALVKYLQKKRNGIIDRATSEVTEEVVSGAVHHSLNLSEPYKAKKPNKKR
PQTHRSSVAREMANVLDTSLLQALVLTRQSPGAIELLKGLNYCDLKICEEFLKEKSDYMV
LLELYRSNDMHREALQLLNRLVEESKSAMANADFSKKFNPQMIIEYLRPLCRSDPMLVLE
SSLYVLERNPSDTIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSETGINPNLQN
ELVQLYLSEVLDWYKILKDEGNWSDKTYSPTRNKLISTLESNSGYNTDTLLKRLPQDALF
EERAIMYGKMNQHLRALSLFVHKLHMPERAVAYCDRVYEEGAQQPSKSNIYFNLLQIYLN
PKKAEKEIEQKIIPVASQYPGIQRVNSTTKLRGGRMGRKVVEIEGAEDTRFSPSGPDSGR
SDGDGDDVSDGGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDLVSFLEPLLRNSS
EHRRNYMVIKNLILRANLQVKEDLYKRRQAVVKIDGDSMCSLCHKRIANSAFAIYPNGQT
LVHFVCFRESQQIKAVRGANSVKRR
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacagcgcgtatgacgccgtcgagctggtctccggcgtgcccggccgcatcgag
gccgtcgcctcccacggcgggaagctcctcgtcgcggcctccgactgctccctccgcatc
tactccgcgccggcccccgccgacggaggcgagatccggagggacgggccctacgcgctc
gagcgccaggagcagcgcctgtggcgccgcgcgccctccgcgatggaggccagcgccagc
cgcgacctcctgctctcgctctccgagtgggtcgccctccaccgcctcccggggctcgag
accgtcgccgtcgtctccaagaccaagggcgccaacgtcttcgcctgggacgaccgccgg
ggcctgctcgccgccggccgccagaagcgcctaaccgtcttccgcctcgacagtgggcga
gaatttgtcgaggtgaaggaatttagtgtgcctgatattgtgaaatcaatggcctggtgt
ggtgacaacatatgccttgggatcaggagggactatatgatcataaatagcgtgactggg
gcattaactgaagtgttctcttctgggaggattgctcctcctttagttgtgcctcttcct
accggggagctcctccttggaaaggacaacatcggtgtatttgttgatcaaaacgggaaa
cttattcatgacggtcggataatttggtcggacactcctgcctctgttgttgtacataag
ccgtatgctgtggcacgtctgccacgacatgttgagatacggtctcttagagctcccagc
gcattggttcagacagttgtcctccgtgatgttcaaaagcttgttcaaactgacaactat
atacttgcttcgctgtccaactcagtctatggtttgctgcctgttcctattggtgctcag
atagtgcaattgaccgcctctggagaatttgaggacgcgctggcattgtgtaagttactt
ccacctgaggattcaaacctacgagctgcaaaagaaagctcaatacacatgagatatggg
cacttcttatttgataatgggagctatgaggaagcaatggaacagttttcggatgcacat
gtggatattacttatgtgctatctctatacccataccttgttctgcctcaaacacacatt
ataggtgaacatgacaagcttcaagaccttcaagaattagcaagagaatcttctgatgcg
acagatgaaatggaagcatactctttgcaacttcatgattctgatgataaatctccattg
gagaacaagaaaatgagtcataatgctctaatagcccttgtgaagtacttgcagaagaaa
agaaatggtataattgatagagcgacatctgaagtaactgaggaggtcgtctctggagct
gtgcaccatagcttaaacttatctgagccatataaggcaaagaagccaaataagaaacgg
ccccaaacacatagaagctctgttgcaagagaaatggcgaatgtgctggacacatctctt
cttcaagctcttgttcttacaagacagtcaccaggagctatagagttattgaaaggactc
aattattgtgatttgaagatatgtgaggagtttctgaaggaaaagagcgattatatggta
ttacttgagctctacagaagcaatgacatgcaccgtgaagctctccagttactcaatcgg
ttggttgaagaatcgaagtctgcgatggctaatgctgattttagtaaaaagtttaaccca
caaatgatcattgagtatctcaggcccctttgtagatctgacccaatgctggttttggag
tcttctttgtatgttcttgaacgcaacccgtcagacactattgagctctttttgtctgaa
aatgttccagcagatttggtaaattcatatctgaaacagcatgctccaaatttgcagtca
acttacttagagctaatgctttcaatgagtgaaaccgggatcaatcctaatctacaaaat
gagctggtgcaactttacctttctgaagttcttgactggtacaagattctgaaggatgaa
ggaaattggagtgataaaacatattccccaacgcggaacaagttgatatctacattagag
agtaattcaggttacaatacggacacacttcttaaacgccttccgcaggatgctcttttt
gaagagcgtgctatcatgtacgggaaaatgaatcaacacctccgtgcattatctctcttt
gttcataagctccatatgccagagcgtgcagttgcatactgtgaccgtgtttatgaggaa
ggagcgcagcagccttccaagtccaatatttattttaatcttctgcaaatttatctaaac
ccgaaaaaagctgaaaaagagatcgagcagaaaattattccagtggcatcacagtaccct
ggaattcagagggttaactctactactaagctcagaggagggcgtatgggtagaaaggtt
gttgagattgaaggggctgaagacacacgctttagccctagtggaccagatagtggccga
agtgatggtgatggagatgatgttagcgacggaggccctataatgttgaacgaagcactt
gaattgttaagccaacggtgggacagaataaatggtgctcaggctcttcggttgttacca
agagacacgaaactgcaggatctggtgtcatttcttgaaccactattgcggaactctagt
gaacatcggcgcaattatatggttatcaaaaacttgattctccgggcaaacttgcaggta
aaggaggacctgtacaaacgacgccaagctgttgtgaagattgatggagatagcatgtgt
tctctttgtcataagcgcattgcaaacagcgcttttgcaatttatccaaatggacagacg
ctggtgcattttgtatgctttagagaatcacaacagattaaggctgttagaggcgcaaac
tctgtgaaacgtagatga
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