Aegilops tauschii (wheat D): 109780045
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Entry
109780045 CDS
T04345
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03013
Nucleocytoplasmic transport
ats03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109780045
03015 mRNA surveillance pathway
109780045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109780045
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109780045
mRNA cycle factors
P-body specific factors
109780045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
RskA_N
Motif
Other DBs
NCBI-GeneID:
109780045
NCBI-ProteinID:
XP_020194225
UniProt:
A0A453CH45
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Position
2D:complement(477368517..477381598)
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AA seq
1172 aa
AA seq
DB search
MEHMENESHEGKKQDEEGHHNNEVVRLEEYKKLIDVKTALRQSNLNPERPDASHLRTLDS
SIKRNTAVIKKLKAINDEQKDGLMEELKSVNLSKFVSEAVSYICEAKLRSADIQAAVQIC
SLLHQRYKDFSPCLIQGLLKAFFPGKAGDDIDPDKNSRAMKKRSTLKLLMELYFVGIVED
ASTFINIIKDLTSVEHLKDRETTQTNLTLLASFARQGKHFLGLQKHGQEAYDEFFMGLNI
TDDLKTFFKKSLSSYYDAAVAILMSEHASLRAMESENAKILNVKGELSDENTALYEKLRK
SFDQLLRCVSSLAEALDMQPPVMPDDGHTTRVTTASELSPSGKHFSAVEPIWDDEDTKAF
YESLPDLRVFVPGVLLGEAEPKLVDQHGKVHEQTGEHKLEQGTEVQNNAEASVPEHQLEG
KTNVGSKNREKKDKTGKEISKEKEADQKGDIEREKVRVTDGASLDNLLQRLPRCVSRDLI
DQLTVEFCYLNSKANRKKLARALFNVPRTSLELLPFYSRLVATLSTCMKDLPSMLLSMLE
EEFNFLMNKKDQIKIETKIRNIRFIGELCKFNIAPSGLVFSCLKACLDDFSHHNIDVACN
LLETCGRFLYLSQGTTVRMSNMLEILRRLKNVKNLDPHHSTLVENAYYLCKPPERSARVS
KVRPPLHQYIRKLLFSDLDKTSVQHVLRQLRKLPWAECEEYLVKCFLKVHKGKYSQVHLI
ALLTAGLSHYHDDFHVAVVDEVLEEIRVGLELNDYAMQQRQLAHMRFLGELYNYEHIDSS
VIFDTLYLITVFGHGTLEQDLLDPPEDFFRIRMIVTLLQTCGHYFDRGSSKRKLDRFLLH
FQRYILNKGPLPLDVEFDVQDMFAELRPNMTRYSSPELLASALAELEENEKTKQSESAAS
DASCKSSANRPDKNGRGHGEVADSESYSGSRSIYHDGSEDGDSLYEENSDDRSGNGVVDD
DDAMPSGSDEEERVQVRHKVVQVDPKEQEDFDRELRALLQESLESRKLEPRVKSTLNMTV
PMKIVEGSKDSRATERESGEELTAEENGNAGGGSEVKVCVRVLVKKGHKQQTRQMLIPGD
CSLVQSTKQQEAALLEEKQNIKQKILEYNEREEEEFNASAFQTGFWGQGGSSAGGSIGSA
GRGSWDGSNRGGRGRQRYYIAGGIYHGYGRGR
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggagcacatggaaaatgagagccacgaggggaaaaagcaagatgaagaggggcatcat
aacaatgaggtggtccgtcttgaagaatacaagaagcttattgacgtaaagacggctctc
cgccagagtaacctaaaccctgagaggcctgatgcaagtcacctgagaactcttgattcc
agtattaagcgcaacacagcagttatcaagaagctcaaagcgataaacgatgaacaaaag
gatggcttaatggaagaattgaaaagtgtgaatctaagcaaatttgtcagtgaagcagtt
tcttacatttgtgaggccaaacttcgttctgctgatatacaagctgctgttcagatttgc
tcgctgcttcatcaaaggtacaaggacttctctccttgccttattcaaggactgctgaaa
gccttctttccagggaaagctggagatgatatagatccagataaaaactcaagggccatg
aagaaaagaagcacactgaagcttcttatggaattgtattttgttggaattgttgaagat
gctagtactttcataaacattataaaggatctgacgtcggtggagcatttgaaggaccgt
gaaacaactcagacaaatttgactctccttgctagttttgctcgccaaggaaagcatttt
cttggattacaaaaacatgggcaagaagcttatgatgagttttttatgggcctcaatatt
accgatgatctgaagacgttctttaagaaatccttgagctcttactatgatgccgcagtt
gcaattctcatgtcagaacatgcgtctcttcgtgcaatggagtctgaaaatgcaaagatt
ttaaatgtcaaaggggaactaagtgatgagaatactgccttgtatgagaagcttcggaaa
tctttcgatcagttattgcgctgcgtttcatccttagctgaagctcttgatatgcaacct
cctgttatgccagatgatggacatacaacaagggtaactacggcgtcagagttatcccct
tctgggaaacatttttctgcagtagaacctatctgggatgatgaagacacaaaggcattt
tatgagtctttgcctgatctcagagtattcgtgcctggtgtactattgggagaagctgaa
ccaaagttggtagatcaacatggaaaggttcacgaacaaactggtgagcataaattggaa
caaggaactgaagttcaaaacaatgctgaagcttctgtccctgagcaccagttggaagga
aaaacaaatgttggatccaagaatagagaaaaaaaagataaaacaggcaaagaaatttct
aaagaaaaagaggctgatcaaaaaggagatattgaaagagaaaaagtaagagtcacagat
ggcgcaagtttggacaacctgcttcagaggctgccaagatgtgtgagccgagatctaatt
gaccaattgacggtagagttttgctatctgaattctaaagcaaacaggaagaaacttgca
cgagctttattcaatgttccaaggacttcgttggaactgttacctttctattcccgttta
gttgccactttgtccacatgcatgaaggatctcccaagtatgctcttgtcaatgcttgaa
gaagagtttaactttttgatgaacaagaaggatcagatcaaaatcgaaacaaaaattaga
aatattagatttattggggaattgtgcaaattcaatattgctccatcaggccttgttttt
agttgtttgaaggcttgcctagatgattttagccaccataacattgatgtggcctgcaat
cttcttgagacctgcgggcgctttctttatctctcacaaggaactacagttcgcatgtca
aacatgctggaaatactgaggaggttgaaaaatgtgaagaatttggatccacaccacagc
acacttgtagagaacgcctattacttatgcaaaccaccagaaagatctgccagagtctct
aaagtccggccacctctgcatcagtacataaggaagctgcttttctcagatcttgataaa
acaagtgttcagcatgttcttcgtcagttacgcaagttaccttgggctgagtgcgaggag
tacctggtgaaatgttttctcaaagttcacaagggaaaatatagccaagttcatctgatt
gctcttctaactgctggtcttagtcactatcatgatgattttcatgtggctgtggtagat
gaggttctagaagagattagagttggacttgagctgaatgactatgcaatgcaacagcga
caacttgcccacatgcgattccttggggagctatataactacgagcatattgattcatca
gttatatttgacacattgtaccttattactgtatttggtcacggaacactggaacaagat
ctgcttgatcccccagaagatttcttcaggataaggatgattgttacacttctccagacg
tgtggtcactattttgatagaggctcttcaaaaagaaagcttgacagatttttgctacat
tttcaaagatatattctgaacaaagggccattgccacttgatgttgagtttgatgtgcag
gacatgtttgctgagctacggcctaacatgactaggtattcatctccagaactgttggct
tctgctctggctgagcttgaagaaaatgagaagacgaaacaatccgaaagtgctgcttct
gatgccagctgcaagagctcagcaaacaggccggacaaaaatggcaggggccacggagaa
gtagcagacagtgaaagctattcaggtagcagaagcatctatcacgatggaagtgaagat
ggagattctctgtacgaagaaaactcagatgacaggtcagggaatggagtcgttgatgac
gatgatgccatgccttctggttctgatgaagaagaaagggtccaggttagacataaggtg
gtgcaagttgaccctaaggagcaagaagactttgatcgggagctgagggcccttctacag
gaaagcttggagtcgcgtaagttggagccacgggtgaaatccactttgaatatgactgta
ccgatgaaaatcgttgaggggtcaaaggactcgagagccactgaaagagagagtggagaa
gagcttacagctgaggaaaatggtaatgctgggggcggtagtgaggtcaaggtgtgcgtc
agggtgcttgtgaagaaagggcacaagcagcagacaaggcaaatgctcattcctggggac
tgctcactcgttcagagcacaaagcagcaagaggcggctctgctagaggagaagcaaaac
atcaagcagaaaatccttgaatacaacgagagggaggaggaagaattcaatgcatcagca
ttccaaaccgggttctggggtcaaggaggaagcagcgcaggcggcagtatcggctcggcc
gggcgtggttcctgggacggttcaaacagaggcggccgcggccggcagcggtactacatc
gctggcgggatctaccatggctatggcaggggaaggtga
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