Aegilops tauschii (wheat D): 109782122
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Entry
109782122 CDS
T04345
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03018
RNA degradation
ats03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109782122
09123 Folding, sorting and degradation
03018 RNA degradation
109782122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109782122
03041 Spliceosome [BR:
ats03041
]
109782122
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109782122
mRNA degradation factors
5'-3' decay
Lsm complex
109782122
Spliceosome [BR:
ats03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109782122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
109782122
NCBI-ProteinID:
XP_020196300
LinkDB
All DBs
Position
1:complement(344562596..344564774)
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AA seq
89 aa
AA seq
DB search
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDAA
NT seq
270 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaacaacccctcccagctcctcccctcagagctgatcgaccggtgcatcgga
tccaagatttgggtgatcatgaagggagacaaggagctcgtcggcactctctgcgggttc
gacgtctacgtcaacatggtcctcgaggacgtcaccgagtatgagtataccgccgagggc
cggcgcattacgaaacttgatcagatcctcctcaatggcaacaacatagccatcttagtt
cctggtggttcaccgccagatgctgcatga
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