KEGG   Aegilops tauschii (wheat D): 109782122
Entry
109782122         CDS       T04345                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
ats  Aegilops tauschii (wheat D)
Pathway
ats03018  RNA degradation
ats03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ats00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109782122
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109782122
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ats03019]
    109782122
   03041 Spliceosome [BR:ats03041]
    109782122
Messenger RNA biogenesis [BR:ats03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109782122
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109782122
Spliceosome [BR:ats03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109782122
SSDB
Motif
Pfam: LSM DUF7452
Other DBs
NCBI-GeneID: 109782122
NCBI-ProteinID: XP_020196300
LinkDB
Position
1:complement(344562596..344564774)
AA seq 89 aa
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDAA
NT seq 270 nt   +upstreamnt  +downstreamnt
atgtctcagaacaacccctcccagctcctcccctcagagctgatcgaccggtgcatcgga
tccaagatttgggtgatcatgaagggagacaaggagctcgtcggcactctctgcgggttc
gacgtctacgtcaacatggtcctcgaggacgtcaccgagtatgagtataccgccgagggc
cggcgcattacgaaacttgatcagatcctcctcaatggcaacaacatagccatcttagtt
cctggtggttcaccgccagatgctgcatga

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