Aegilops tauschii (wheat D): 109784058
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Entry
109784058 CDS
T04345
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03013
Nucleocytoplasmic transport
ats03015
mRNA surveillance pathway
ats03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109784058
09122 Translation
03013 Nucleocytoplasmic transport
109784058
03015 mRNA surveillance pathway
109784058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109784058
03041 Spliceosome [BR:
ats03041
]
109784058
Enzymes [BR:
ats01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109784058
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109784058
Spliceosome [BR:
ats03041
]
Complex C
Other components
EJC/TREX
109784058
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109784058
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
109784058
NCBI-ProteinID:
XP_045086060
LinkDB
All DBs
Position
1:505507541..505512343
Genome browser
AA seq
434 aa
AA seq
DB search
MMGEAKENDVYEEELLDYEEDDDKALDASSTANAKPAADAAQAKKGYVGIHSSGFRDFLL
KPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPTAG
QVAALVLCHTRELAYQICNEFERFSKFLPELKVAVFYGGVHIKKHQDLLKNDCPHIVVGT
PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS
KEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTESEKNRKLNDLLDALDFNQVVI
FVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGID
IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIK
ELPEQIDTSTYMPS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgatgggggaggccaaggagaacgacgtgtacgaggaggagctgctcgactacgaggag
gacgacgacaaggccctcgacgcctcctccaccgccaacgccaagcccgccgccgacgcc
gcccaggccaagaagggctacgtcggcatccacagctccggattccgcgacttcctcctc
aagcccgagctgctccgggccatccaggactgcggattcgagcacccctccgaagtgcaa
catgagtgcatccctcaagcaatcctcggaatggatgtcatctgccaagcaaaatctggg
atggggaagactgctgtctttgtcctgtcgtctctccagcagatcgatcctactgctggt
caggtggcagcgctcgtattgtgccacaccagagagctggcttaccagatttgcaacgag
ttcgagaggttcagcaaatttctgcccgaattaaaggttgctgtattctatggaggtgtt
cacatcaagaaacaccaggatttgctcaagaacgactgcccccacattgttgtgggcaca
cctgggaggattctagctctagctagagacaaggacctttctttgaagaatgtgaggcat
ttcattcttgacgagtgtgacaagatgcttgagtcactggacatgcggagggatgtccag
gagattttcaagatgacacctcatgataagcaggtcatgatgttttcggcaactctcagc
aaggagatccgtcccatttgcaagaaatttatgcaagatcctatggaaatttatgttgat
gatgaggcaaagttgacccttcatggtcttgttcagcactatataaaattgacagagtca
gagaagaatcgaaaattgaacgatctcttggatgctcttgatttcaaccaagttgtgata
tttgtgaagagcgttagcagggctgcagagctgaacaagttgctgtgtgaatgcaacttc
ccttcaatctgcatccattctggcatgacccaggaagagaggctgacccgatacaagaac
ttcaaggaagggcacaagaggattcttgtggcgacggatttggttggcagaggaatcgac
attgagcgtgtcaacattgtgataaactatgacatgcctgattcagctgatacctacttg
cacagggttggaagggctgggcgttttggcaccaaggggctcgccataacttttgtttcg
tcggcctcggactcggacgtccttaaccaggtgcaagaacggtttgaggtggacatcaag
gagctgcctgagcagattgacacttcaacatacatgccttcgtag
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