Acinetobacter sp. TTH0-4: AMQ28_06465
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Entry
AMQ28_06465 CDS
T04075
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
att
Acinetobacter sp. TTH0-4
Pathway
att03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
att00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMQ28_06465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
att03019
]
AMQ28_06465
03016 Transfer RNA biogenesis [BR:
att03016
]
AMQ28_06465
Enzymes [BR:
att01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AMQ28_06465
Messenger RNA biogenesis [BR:
att03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMQ28_06465
Transfer RNA biogenesis [BR:
att03016
]
Prokaryotic type
tRNA degradation factors
AMQ28_06465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_RRP5
LppA
KH_N4BP1_2nd
KH-I_KHDC4-BBP
S1_2
KH_KhpA-B
OB_RRP5_4th
Molydop_binding
KH_DEAH11_2nd
DUF3016
Motif
Other DBs
NCBI-ProteinID:
ALD02042
UniProt:
A0A0M4GJC7
LinkDB
All DBs
Position
complement(1362717..1364810)
Genome browser
AA seq
697 aa
AA seq
DB search
MSMFNIIRKEFQYGQHTVVLETGRVARQANTVVITMGGVTVLVAIVAQPKAKAGQDFFPL
TVNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVVS
SDKTMDADIAAMIGASAAMSIAGVPFRGPIAGARVGLINGEYILNPNHEQLKESDLDLVV
AGTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAAGAVESTWVAPSKN
EALLEQLKTAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFE
DLKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLGRAHGSALFTRGETQALVTTTLGN
TRDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPA
DRFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVL
SDILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEAALNQAYAGRMHILNEMN
QVISRARPEISMHAPTFQVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVF
GETKAAAAAAVAKIQALTAEIEPGTIYMGKVIRIVEFGAFVNIMPGTDGLLHISQISNER
IANVADVLKEGQEVKVQVADVDNRGRIKLTMKDIEQV
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgtttaatattattcgtaaagaattccagtacggtcaacatacagttgtactt
gaaacaggtcgtgtcgcgcgtcaagcaaacaccgttgtgattacaatgggcggtgtaacc
gttcttgtagcaattgttgctcaaccaaaagcaaaagcgggtcaagacttcttcccactg
actgtgaactatcaagaaaaacaatatgctgctggccgtattccaggtggttatggtaaa
cgtgaaggtcgtcagtctgaagctgaaactttaatttcacgtcttattgaccgtccaatt
cgtccattgttcccagaaggtttctataacgaaatccaagtaacagcgactgttgtttct
tctgataagactatggatgctgacattgctgcaatgatcggtgcttcagctgcaatgtca
attgcgggtgttcctttccgtggccctatcgcaggtgctcgcgttggtttaatcaacggc
gaatatattttaaatccaaaccacgaacaactgaaagagagtgatcttgatcttgtggtt
gcaggtactgaatctgcggtactaatggttgaatctgaagcgaaagaactttcagaagac
caaatgttaggtgctgtactttttggtcatgacgaaatgcaaattgctgttcaagcaatt
aaagaatttgcagctgctgctggtgctgttgaatcgacttgggttgcaccaagcaaaaat
gaagcgcttcttgaacaattgaaaactgcttttgaagcaaaaatttctgaagcgtatacc
attgctgtaaaacaagaccgttatgcggcacttgatgcactttatgctgaagcagttgct
caattcgtccctgaaaatgacgaaactggtattgctgatgaagtgaatgaattattcgaa
gatcttaaataccgcacagtacgtgacaacattttgtcaggtaagccacgtattgatggt
cgtgataccaaaactgttcgtggcattgacgttcaagtgggcgtattgggtcgtgcacac
ggttcagcattgttcacacgtggtgaaactcaagcgttggtgacaacgactttgggtaat
acacgtgatgccttgatggtcgatacgttgtctggtacgaaaactgacaatttcatgctt
cactacaatttccctgcatactctgtgggtgaaactggtcgtgaatctggtcctaaacgt
cgtgaaattggtcatggtcgtttggcgcgtcgtggtgttcaagcggtacttccacctgct
gatcgcttcccgtatgtgatccgtatcgtatctgatattactgaatcaaatggttcatct
tcaatggcttctgtatgtggtgcttcattatcacttatggatgcgggtgttccactgaaa
gcaccagttgcaggtattgcaatgggtctagtgaaagaaggcgagcgtttcgcagttctt
tctgacattttaggtgatgaagatcatttaggtgacatggactttaaagtagccggttct
gcaaacggtattactgcgcttcaaatggatatcaagatcgaaggtatcactgaagaaatc
atggaagctgcattgaaccaagcgtatgcgggtcgtatgcacatcctaaacgaaatgaac
caagtaatttcacgcgctcgtcctgaaatttcgatgcatgcaccaaccttccaagtgatc
aacatcaacccggataaaatccgtgatgtgattggtaaaggcggcgcaacgattcgtgcc
attactgaagaaactaaagctgcaatcgatatcgaagataacggtacagttcgcgtattt
ggtgaaacgaaagctgctgctgctgctgcggttgcaaaaattcaagcgttaacggctgaa
attgaaccaggtacaatttatatgggtaaagtgatccgtattgttgaatttggtgcattt
gtaaatattatgccgggtacggatggtctacttcacatttctcaaatttcaaatgaacgt
attgcaaatgttgcagacgttttgaaagaagggcaggaagtgaaagtacaagttgctgac
gtcgacaaccgtggtcgtatcaagttaacgatgaaagatatcgaacaagtataa
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