Acinetobacter sp. TTH0-4: AMQ28_14040
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Entry
AMQ28_14040 CDS
T04075
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
att
Acinetobacter sp. TTH0-4
Pathway
att03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
att00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMQ28_14040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
att03400
]
AMQ28_14040
Enzymes [BR:
att01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMQ28_14040
DNA repair and recombination proteins [BR:
att03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMQ28_14040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ALD03360
UniProt:
A0A0M4GWJ5
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All DBs
Position
2914448..2917909
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGNLQGSSASLLFKEMASQTKQLFILVATNNQHLGQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLSILSNMPQSGVLLLSASTLVQRVAPT
SWILGEHFDIQVGQKFKLEQQKMRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQNAPI
RIDLFDDEIESLKFFDPETQRTTQNLQQFAVLPAKEFPLKEGRSIFRDRYAESFPNANPK
KNPVYQDVLEGIASPGLEFYFPLFFSKEAMLNQSMLMAYLPKNSIVITDKYLDETLASFW
KDVIRRYEDRRHNIDHPILSPEQIFLPPNQVLEQLNQFARIIASAEEFVEKTGVLNFKTE
LPPRLPVDPKQEQPFSAVKKYIDAASHPVLLVAESAGRRETLKDALRAALGDIPNIDNFA
DFRKSLYAIAITSAPLDRGLVIPNQLTVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDYGVGRYAGLVTLSIDDQDYEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQARPGFSFELEQSPYMQFAS
GFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKSHVKTTEDLAAGKVDIVIGTHKILQ
QSIQFKNLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTGDSVKEAILRELLRGGQVYFLHNEVDSIERTAESLRELVPE
ARVAVAHGQMRERELEHVMQQFYHKEYNVLVCSTIIETGIDVPNANTIVIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSLKSLKGDAEKRLDAIQRASNLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLMFYKRISNTDSQEKLDNIRMELIDRFGVPPQPVKQLFAVHQIRLKAEQLGI
TKVDIGSKGGHIEFSPDTPVQAISIIQMMQKHPTFFRMEGGQRLKIMVMLEDHQKRIQFI
SDLLSNLLQEIHG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgttccaacaagaaatttctcaattaaatttgcagcaacttaaagcaggcgaaaaacgc
tgggtcggtaatttacaaggctcatctgcgtctttattgtttaaagaaatggcgagtcaa
accaagcaattgtttattttagtcgccacaaataatcaacatttgggacagttggaaagt
gaattagagttttatggcataaaaccgaccattttcccagattgggaaattttgccttac
gatcgtttgtcgcctcatcaagatattgtctctgaacgactatccattttatccaatatg
ccgcaaagcggggtactcctcctttcagcttcgactttggtacagcgtgtagcgcccacc
tcatggatattgggtgagcattttgatattcaggtcggtcaaaagtttaaattagagcag
caaaagatgcgcttgattcaagcaggctatcatttggtggatacagtgtatgatcatggc
gaatttgctgtccgcggcagtattatggatatttatgcgtccgggcaaaatgcaccaatt
cgtatagatttgtttgatgatgagatagaaagcttaaaattttttgatccagaaacgcaa
agaaccacgcaaaacttgcagcagtttgccgtattaccagcaaaggaatttcccctcaaa
gaagggcgttcaatttttagagatcgttacgcagaaagttttccaaatgcaaatccaaaa
aaaaatccagtatatcaagatgtgttagaagggattgcatccccaggtcttgagttttat
tttcctttattttttagtaaagaggctatgctgaatcaaagcatgcttatggcttattta
ccgaagaatagtattgtcataacagacaagtatttagatgaaactttagccagtttttgg
aaagatgtcattcgtcgttatgaagaccgtcgtcataatattgatcatccaattttatca
cctgaacagatttttctgccgccgaatcaagttttagaacaactgaatcaatttgctcga
attattgcttctgcagaggagtttgtagagaaaacaggtgttttaaattttaaaactgaa
ttaccgccgcgcttacctgttgaccctaaacaagagcaacccttttcagccgttaaaaaa
tatattgatgctgcaagtcatcccgtattattggtcgcggagagtgctggtcgccgtgaa
acgttaaaagatgcattgcgagcagctttaggcgatattcccaatattgataattttgct
gactttagaaaatccctatacgcaattgcaatcactagtgcgccacttgaccgtggttta
gtcattcctaatcaattgaccgttatttctgaaaatcagttatatgagcatcgcgttgta
cagcgccgtcgcaagcgtcagcaagaagtatctgaagagtttctgattcgcagtttaacg
gaactgagtatcggtgcacctgtggtacatattgattatggggtagggcgttatgcaggc
ttggtcaccttaagtattgatgatcaagattatgagtttctacagctcgattatgccgat
gctgcgaaagtgtatgtgcctgtcaccaacttacatttgattagtcgctatagtgggggt
gatcctgatttagctccattgcataaattaggtacagatgcatggagtaaagccaagcgt
aaagcgttagaacaaattcatgatgttgctgctgaacttttgcatatacaggcacgccgt
caagctagacctggatttagctttgagcttgagcaaagtccttatatgcaatttgccagt
ggttttgcttatgaagaaactcttgatcaagccaatgcgattgaagcgactttacatgat
atgcaactggcaaaaccgatggatcgcttggtgtgtggtgatgtcggttttggtaaaaca
gaagtggctatgcgtgcggcatttttagctgtgcagaacaataaacaagttgcagtttta
gtgcctacgaccttgttagcacaacaacattatgaatcttttaaggatcgttttgccgac
tggccgattcgaattgaagtactttcccgttttggttcaaataaatcacatgttaaaacc
accgaagacttagccgcaggtaaggtagacattgtgataggaacccacaaaattttgcaa
caaagtatccaatttaaaaacttgggattgatgattgtcgatgaagaacatcgctttggt
gtgcgagacaaagaacggatcaaagccatgcgtgcggatgtggatatgttgactttaaca
gccacaccaattccacggactttaaatatggcattcagtggaatgcgtgatttatcgatt
attgctacgccacctgcccgtcgtttagccgttaaaactttcgtacaagaacatactggc
gattcagtgaaagaagcgattctgcgtgagttgcttcgtggtggtcaggtatatttttta
cataatgaagtcgatagcattgaacgtactgctgaaagtttacgtgaattggtgccagaa
gcacgtgtggctgtggcacatggacaaatgcgcgaacgtgaacttgagcacgtcatgcag
cagttctatcacaaagaatataatgtcttggtgtgttcaaccattattgaaacaggaatt
gatgttcccaatgccaatactattgtgattgaacgagcggataaactgggacttgctcag
ttacatcaattacgtggtcgcgttggacgttcacatcatcaagcgtatgcgtatttactc
gtgccttcgctaaagagcctaaaaggggatgcagaaaaacgtcttgatgccattcaacgt
gcctcaaatttaggtgcagggtttatgctcgcaactgaagatctcgaaattcggggagct
ggtgagttattaggagagcagcaaagtggttctatgcaagcaattggttatagcttgtat
atggaaatgcttgaaaaggcgaccaaagcaattcaaaagggcaaaacgccaaatttcgat
gcgccattatctctaaccgctgaaattaacttacatatgcccgcattaattccagatgat
tatttgggagatgtacatcaaagactgatgttctacaaacgaattagtaatacagatagc
caagaaaaactggacaatattcgaatggaactgatagatcgttttggtgtccctccgcaa
cctgtgaaacaattatttgccgtgcatcagatacgtctaaaggctgaacaattgggtatt
accaaggtagatattgggtcaaaaggtggccatattgaattttctccagatacacctgta
caagcgatcagtattattcaaatgatgcaaaaacaccccacttttttccgtatggaagga
gggcagcgcttaaaaatcatggtcatgctagaagatcatcaaaaaagaattcaatttatt
tcagatttattgagtaatttattgcaagaaattcatggatga
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