Agrobacterium fabrum: Atu0005
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Entry
Atu0005 CDS
T00070
Symbol
dnaQ
Name
(GenBank) DNA polymerase III, epsilon chain
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03030
DNA replication
atu03430
Mismatch repair
atu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Atu0005 (dnaQ)
03430 Mismatch repair
Atu0005 (dnaQ)
03440 Homologous recombination
Atu0005 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atu03032
]
Atu0005 (dnaQ)
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu0005 (dnaQ)
Enzymes [BR:
atu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Atu0005 (dnaQ)
DNA replication proteins [BR:
atu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Atu0005 (dnaQ)
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Atu0005 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AAK85830
UniProt:
A9CKU0
LinkDB
All DBs
Position
circular:3110..3808
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AA seq
232 aa
AA seq
DB search
MREIIFDTETTGLESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAVHGIT
DEFLKDKPKFAEVIDQIREFFDGARWVAHNATFDMGFINAEFARLGIEPVSAELVTDTLS
LARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQTALGFGSAA
RQETIIIEEDVPLAPLQRPSALPSRLDADTIAAHGKLVLGMGDKAIWNRYQN
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgagatcattttcgatacggaaaccacgggcctcgaatcgaagctggaccgcgtg
attgaaatcggcggtatcgaactgatcaatcattttcccactggccgcacgctgcatctt
tatatcagcccggaggatcgcaaggtccacccggatgcgcttgccgttcacggcattacc
gatgagtttctgaaggacaaaccgaaattcgcagaagtcatcgaccagatccgtgaattc
ttcgatggcgcacgctgggtggcgcataatgcgaccttcgatatgggcttcatcaatgcg
gaattcgcgcgtctgggcattgagccggtttccgccgagctggtgaccgacacgctctca
cttgcccgtcgcaagaacccgatggggccgaattcgctggatgcgctttgccggcgttac
ggcatcgacaattcccaccgcaccaaacacggcgcgcttctcgactccgaacttctggcc
gaagtctatatcgaaatgatcggcggtcgccagacagcgctcggtttcggttccgccgcc
cggcaggaaacgatcatcatcgaagaagacgtgccgcttgcgccattgcaacggccaagc
gctctgccctcgaggctggatgcggacacgatcgcagcgcatggcaaactcgttctcggc
atgggcgacaaggcgatctggaaccgctaccagaactaa
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