Agrobacterium fabrum: Atu0023
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Entry
Atu0023 CDS
T00070
Symbol
uvrD
Name
(GenBank) ATP-dependant DNA helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
atu
Agrobacterium fabrum
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu0023 (uvrD)
Enzymes [BR:
atu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Atu0023 (uvrD)
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Atu0023 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_19
NPHP3_N
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
AAK85848
UniProt:
Q7D2B8
LinkDB
All DBs
Position
circular:complement(20039..23596)
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AA seq
1185 aa
AA seq
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MTIDPFDAGPAADTPESWIDWTSARQRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLA
GCRPSAILCLTYTKAAASEMSSRVFDRLAEWATLPDSDLKDRITTIEGKVPDRIKLAEAR
RLFAKALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLT
AVSTEDDAELVQALAYVLDLADESGLEALLSAIIANRSALRSFLHEAKQSGGLDVRLRQE
MQIAAGETEETAAEAFWPLPGLSGLVLDTYLTLADEVGGSRVIEVAYALREAKRQPDPVR
RMELIEAALLTAKGEKKSDAYVINKGMQKSAPDLVDALTLARDHVVACRNRYRLVRMLVA
TKSALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILV
DEAQDTSPVQWSIIQSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERD
ETKRRVDQVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNEPVEHRSNRAG
HPGTVEVWDMVAPETTEDEEDWTAPFDALRESAPATIVARRIAARIADMIGNQTIIEKGV
ERAVEPGDILVLVRKRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVV
LPEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAESVWQRLQVLSGEETSRLSIVTDKLR
HFISLSKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALDHERTGLPGLQA
FLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAFNHSHVPKLRFV
EGDGDAFPVWLPGSGFSNHLIRSDEERLKTAAEDEYRRLLYVAMTRAADHLVVCGYRGQK
ENPECWHAIVKAALAENQDHCQPQAFSADGEEWQGLVWRKSEARPALAPHKPAEPQQEED
HTLPPGLLAPLPALPSLPRPLSPSGAGTIIDDGADDLAVRSPLFGEKTEASSLALQRGKL
VHRMLQALPDFAESEREEAARRYAERAARFWPATDRERLIQAVLRVLSEPAVQPAFSANS
RAEVSIMGTMTLGRQHYAVSGRIDRLAVERDRVILVDYKTNRVPPREARELPFSHVAQLA
IYREILAPLYPGKEFVCALIYTESAAFVRVDDDAMAEALAAIKTK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgacgattgatcccttcgacgccggacctgccgccgatacacctgaaagctggatcgac
tggaccagtgcccggcagcggcttgcctccgatcccgcaagctcggcctgggtgtcggcc
aatgccggctccggcaagacccatgttttgacccagcgcgtcatccgcctgcttttggcc
ggatgccgcccctcggcgatcctctgcctcacctataccaaggccgcagcatctgaaatg
tcgagccgcgtgttcgacaggctggcagaatgggcaacgttgccggattccgatctcaag
gaccgcatcaccaccatcgaaggcaaggtgcccgatcgtatcaagctcgccgaagcgcgg
cggctgttcgccaaggcgctggaaacaccgggcgggctgaaaatccagaccatccacgct
ttttgcgaagccctgctgcaccaattcccgctggaggccaatgtcgccggccatttctcg
gttctcgatgatcgcgccgccaccacgcttctggccgaggcgcgccgttcgcttctgacg
gcggtttcgactgaggacgacgcggaattggtgcaggcgctcgcctatgtgctcgatctt
gccgatgaaagcggcctggaagcgctgctttccgccatcatcgccaatcgcagcgcgctt
cgctcgttcctgcacgaggcaaaacagtcgggcggcctcgatgtccgtttgcggcaggag
atgcaaattgctgccggggagaccgaggaaacggcggctgaagccttctggcccctgccc
ggtctttccggccttgtgctcgacacctaccttacgcttgccgatgaggtgggcggatca
cgtgtcatcgaggtcgcttatgcgctccgggaagcaaaacggcagccggacccggtgcgg
cggatggaactcatcgaagccgcgctgctgacggccaagggcgagaaaaaatcggacgcc
tatgtcatcaacaagggcatgcagaaatccgcgcctgatctcgttgatgcgctgacgctg
gcccgcgaccatgtcgtggcctgccgcaatcgctatcgtctggtgcgcatgctggtggca
actaaaagtgcccttgtgctggccgaacggttgatcggcgatttcgaagacctgaaaaag
cagcgaagccagctcgattttgaagatctgatcgagcgtgccgccaatctgctcaatcgc
gatacggcaggtgcatgggtgcattacaagctggatcagggcatcgaccatattctggtc
gacgaggcgcaggataccagcccggtgcaatggtcaatcatccagtcgctggcggcggat
ttcttcaacggtgaaagcgcccgcatggggcggcgcacactctttgccgtgggtgacgaa
aaacagtcgatctattcctttcagggcgcgcgaccggaacggttctcgcaggagcgcgat
gagaccaaaaggcgtgtcgatcaggtggagcaggccttccaccgcatccgcctgccgctc
tccttccgctccaccgaagatgtgctggctgccgtcgaccaggtcttttcagacccgaaa
aacgcgagcggcctcagcgccgacaatgagcccgtcgaacaccgctccaaccgcgccggc
catcccggcaccgtggaagtgtgggatatggtggcaccggaaaccaccgaagatgaagag
gactggaccgcccccttcgacgcgctgcgggaaagcgcgccggccaccatcgtcgcccgg
cgtatcgccgcgcgcattgccgatatgatcggaaaccaaaccatcatcgaaaagggcgtg
gagcgtgccgtcgaacccggcgatattctcgtgcttgtcagaaaacgcgctgccttcgtc
aacgcgctgacccgcgagttgaagcggcgcaagaacattcccgttgccggtgccgaccgc
ctccgcctgaccgatcacatcgccgtgcaggatcttctggcgctcggccggttcgtggtg
ctgccggaggatgatctttcgctggcggccctgctgaagagcccgcttttcaacctgacg
gaagacgatgtcttcgagatcgccgcgacgcgatccgaggcggagagtgtgtggcagagg
ctgcaagtcctttcgggcgaagaaaccagccgtctatccatcgtcaccgacaagcttcgg
catttcatttcactgtcgaaaaccgccacggtgcatgattttttcgcggcggttctgacc
ctgcatgacggccgcaaaaaatttcttggccgtcttggcaacgaggcgagcgacgttctc
gacgagttcctctccttcgcgctggatcacgaaagaaccggcctgcccggtcttcaggct
tttctctcggttctggagaccgattcacctgaagtgaagcgcgagcaggacaaggatcgc
ggcgaagtgcgcatcatgaccgtgcatgcgtccaaggggcttgaagcaccggtggtcttt
gtcgtggatggcggctcgaaggccttcaaccacagccatgtgccgaaactgcgcttcgtg
gagggggatggcgatgcctttccggtctggctgcccggcagcggtttttccaatcatctc
attcgctcggatgaggaacgcctgaaaacggccgcggaagatgaatatcgtcggctgctt
tatgtggcgatgacccgcgccgccgatcatcttgtcgtctgcggttatcgcggccagaag
gaaaatcccgaatgctggcacgctatcgtcaaggcggcgcttgcggaaaatcaggatcat
tgccagccgcaggcgttcagcgccgatggcgaggaatggcaggggcttgtctggcgtaag
tccgaagcacgcccggcacttgcaccgcacaagcccgcagaaccccagcaggaagaagac
cacacgcttccgcccggccttcttgcccccctgcccgcgctgccctccctgccaaggccg
ctcagcccatcgggcgcgggaaccatcattgatgacggtgcggacgatctggccgtgcgt
tcaccgctgttcggagaaaaaaccgaggcctccagccttgccctgcaaaggggcaagctg
gtgcatcgaatgctgcaggccctgccggattttgcggaaagcgagcgggaagaggcagcc
cggcgttatgccgagcgcgcagcgcgtttctggcccgccactgatcgggagcgtttgatc
caggcggttttgcgggtcctctccgaaccagcggttcagccagccttttccgccaacagc
cgtgcggaagtgtcgattatgggcacgatgaccctcggccggcagcactatgccgtctcc
ggccgcatcgaccggctggcggtggagcgtgatcgggtcattctggtcgattacaagaca
aaccgcgtgccgccgcgcgaagcacgcgagcttcccttctcgcacgtcgcgcagcttgcc
atttatcgcgaaattctggcgccgctttaccccggcaaggaatttgtctgtgcgctgatt
tatacggaaagtgccgcttttgtgcgggttgacgacgatgccatggcagaggcccttgcc
gcaataaagacaaagtga
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