Agrobacterium fabrum: Atu0061
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Entry
Atu0061 CDS
T00070
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Atu0061 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atu03019
]
Atu0061 (recQ)
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu0061 (recQ)
Enzymes [BR:
atu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Atu0061 (recQ)
Messenger RNA biogenesis [BR:
atu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Atu0061 (recQ)
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Atu0061 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
HRDC
DEAD
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAK85881
UniProt:
A9CKR9
LinkDB
All DBs
Position
circular:63196..65004
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AA seq
602 aa
AA seq
DB search
MNADPLNILKAVYGYDAFRGRQGEIIQHVVAGNNAFVLMPTGGGKSLCYQIPALAREGMG
LVVSPLIALMVDQVAALRQAGVRAEALNSDLSPEERRTLWRDVRAGNVDILYAAPETLLK
PDVLDALQSIDLSLIAVDEAHCLSQWGHDFRPPYRQLDMLIARFPNTPRMALTATADEPT
RAEILGHLAIDEADAFIAGFDRPNIRYAIMEKDNPRTQLKRFLNGRENESGIVYCLSKRK
VEETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFV
VHIDLPGSIEAYYQETGRAGRDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQK
LDALLGLAETAGCRRQVLLSYFGDRCEPCGNCDTCSSPPDLFEGAIAAQKLLSCIYRTGE
RFGQAYVISVLLGAQDERITKFGHDSITTYGIGKEHDNRTWRAILRQLVALRLIEVDLSG
HGGLSISENGRRFLREKPSLMLRIPSAPRSTRRDAPRNAMSTALPEADRGLFEALRAKRM
EIARAQNVPPYVIFHDKTLIELAAARPASAKEMAQIAGVGQTKLERYGPAFLDTIMQHAA
GE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgccgatcccttaaatatcctcaaggccgtctatggttatgatgcgtttcgcgga
cggcagggcgaaatcatccagcatgtggtggcaggcaacaatgcgttcgttctgatgccg
acgggtggcggaaagtcgctttgttaccagatccctgcgcttgccagagagggcatgggg
cttgtcgtttcgccgctgatcgcgctgatggttgatcaggttgccgcgctgcgtcaggcc
ggtgtaagagccgaagctctcaattcagacctttctccggaagagcgccgcacgctctgg
cgggatgtgcgagccggcaatgtcgatattctctacgccgcgccggaaactcttttgaag
cctgatgtccttgatgcacttcaatccattgacctgtcgctgatcgccgtcgacgaggcc
cattgcctgtcgcaatgggggcatgatttccgaccgccttatcgccagctcgatatgttg
atcgcgcgttttcccaatacaccgaggatggcgctgacggcgacggctgacgaacccacc
cgtgcagagattctcggccatcttgccattgatgaagctgatgccttcattgccggcttc
gatcgccccaacatccgctatgcgatcatggagaaggacaatccccgtactcagttgaaa
cgttttctcaacggccgggaaaatgaaagcggcatcgtttattgcctgtcgaaacgcaaa
gtggaagaaacggcggcatggctgcgggaagagggccgtgacgcgttgccctatcacgcc
ggcatggataaggccgcccgcgaggaaaaccagacccgtttccagcatggtgaggcagtc
atcatcgtcgcgacggttgccttcggtatgggcatcgacaagccggatgtgcgcttcgtc
gtccatatcgatctgcccggaagcatcgaggcctattatcaggaaaccggccgggccggg
cgcgatggcctgccgtccgatgtattgatgctctatggttatgaagatattgccctgcgc
aaccgtttcatcgaggagtcggacgctgcggaccagcgcaaatacatggaacgacagaag
ctcgatgcgctgcttggccttgcggaaaccgcgggttgccggaggcaggtgctgctctcc
tattttggcgaccggtgcgagccttgcggcaattgcgatacctgctcgtcgccgcccgat
ctattcgagggggccattgccgcacagaagctgctttcctgcatttaccgcacgggagaa
cgtttcggacaggcctatgtcatcagcgtattgctgggcgcgcaggatgaacggattaca
aagttcgggcacgatagcatcacgacttacgggatcggcaaggaacacgacaatcgcacc
tggcgggccattctgcgtcagctggtggcgttgcgcctgattgaggtggatctgtccggg
catggcggattgtccatttcagagaacgggaggcggttcctgcgcgaaaagccttccctg
atgctgaggataccgtcagcgccgcggtcgacacgacgggatgcgccacggaatgcaatg
tcgacggctctgccggaggcagaccggggcctctttgaggcgctgcgtgccaagcgcatg
gaaattgcccgcgcacagaacgttccgccctatgtgatctttcacgacaagaccctcatt
gaactcgcggcggcgagacctgcctctgcgaaggagatggcgcagatcgccggcgttggg
caaaccaagctggagcgatacggtcccgcctttcttgacacgataatgcagcacgctgct
ggtgaataa
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