Agrobacterium fabrum: Atu0082
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Entry
Atu0082 CDS
T00070
Symbol
pnpA
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Atu0082 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atu03019
]
Atu0082 (pnpA)
03016 Transfer RNA biogenesis [BR:
atu03016
]
Atu0082 (pnpA)
Enzymes [BR:
atu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Atu0082 (pnpA)
Messenger RNA biogenesis [BR:
atu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Atu0082 (pnpA)
Transfer RNA biogenesis [BR:
atu03016
]
Prokaryotic type
tRNA degradation factors
Atu0082 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AAK85903
UniProt:
A9CKQ7
LinkDB
All DBs
Position
circular:complement(84465..86606)
Genome browser
AA seq
713 aa
AA seq
DB search
MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH
DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA
GTQDAVLMVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFEPEDFSA
LENEMLGLAETELRTAYKITEKAARYAAVDAVKTKVKAHFLPEEGEAKYSPEEIGAVFKH
LQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG
EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE
QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS
DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMAN
AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS
ASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV
AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVAADKKDGEAAAE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaacactccgtggaaatcgaatgggcaggccgcccgttgaagctcgagacc
ggcaaggttgcccgtcaggctgacggcgccgtcatcgcaacctacggcgagacgatggtt
ctcgcgaccgtggtttccgcaaagtctccgaagcccggccaggacttcttcccgctgacc
gtcaactatcaggaaaagacctacgcagccggcaagatccccggtggctatttcaagcgc
gaaggtcgtccgtcggaaaaggaaacactggtttcccgcctgatcgaccgtccgatccgc
ccgcttttccctgaaggttacaagaacgacacgcaggttgtcgtcacggtcattcagcac
gatctggaaaatgatccggacgttctgtcgatggttgccgcatccgctgcgctcacactg
tccggcattcctttcatgggtccggtcggcggcgcgcgtgttggctacatcaacggcgaa
tacgttctgaacccgcatctcgacgagatggatgaatcggttctggatctggttgttgcc
ggcacgcaggacgccgtcctgatggtggaatcggaagccaaggaactcaacgaagagatc
atgctcggcgccgtcatgttcggccacaagggcttccagccggttatcgacgcgatcatc
aagctcgctgaagttgccgccaaggagccacgcgaattcgagccggaggatttctccgca
ctcgaaaacgaaatgctcggccttgccgaaaccgaactgcgcaccgcctacaagatcacc
gaaaaggctgcccgttacgctgccgtcgacgccgtcaagacgaaggtcaaggcgcacttc
ctgccggaagaaggcgaagcgaagtacagcccggaagaaatcggcgctgtcttcaagcac
cttcaggccaagatcgttcgctggaacgttctcgacaccaagagccgcatcgacggccgc
gacctgtcgaccgttcgcccgatcgtttccgaagtcggcattctgccgcgcacccacggt
tcggcgctgttcactcgtggtgaaacgcaggcgatcgttgttgcgacgctcggcacaggc
gaagacgaacagtatgtcgatagcctgaccggcatgtacaaggaacgtttcctgctgcat
tacaacttcccgccctactcggtcggcgaaacaggccgcatgggttccccgggccgtcgc
gaaatcggtcacggcaagctcgcatggcgcgctatccgtccgatgctgccgactgcggaa
cagttcccctacacgctgcgcgtcgtttccgaaatcaccgagtccaacggctcctcgtcg
atggcaacggtttgcggcacctcgcttgctctgatggacgccggcgtgccgcttgctaag
ccggttgccggtatcgccatgggcctgatccttgagggcgagcgctttgcggttctctcc
gacatcctgggtgacgaagatcacctcggcgacatggacttcaaggttgcgggtacggcc
gacggcatcacctcgctgcagatggacatcaagattgccggtatcaccgaagagatcatg
aagatcgctctggagcaggcacagggtggccgcaagcacatcctcggcgaaatggccaac
gccatcaccgagagccgtggccagctcggcgaattcgcaccgcgcatcgaagtcatgaac
attccggtcgacaagattcgtgaagtcatcggttcgggcggcaaggtcattcgcgaaatc
gtcgaaaagaccggcgccaagatcaacatcgaagacgacggcaccgtcaagatcgcttct
gcttccggcaaggaaatcgaagcggcccgcaagtggatccactcgatcgttgcggaaccg
gaagtcggccagatctacgaaggcactgttgtcaagaccgctgacttcggcgctttcgtc
aacttcttcggcgcccgtgacggcctcgtccacatctcgcagctcgcttccgagcgcgtt
gccaagacctccgacgtcgtcaaggaaggggacaaggtctgggtcaagctgatgggcttt
gatgagcgcggcaaggttcgcctgtccatgaaggttgtcgaccaggcaaccggcaaggaa
gtggctgccgacaagaaagacggcgaagccgctgccgaataa
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