Agrobacterium fabrum: Atu0110
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Entry
Atu0110 CDS
T00070
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03030
DNA replication
atu03410
Base excision repair
atu03420
Nucleotide excision repair
atu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Atu0110 (polA)
03410 Base excision repair
Atu0110 (polA)
03420 Nucleotide excision repair
Atu0110 (polA)
03440 Homologous recombination
Atu0110 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atu03032
]
Atu0110 (polA)
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu0110 (polA)
Enzymes [BR:
atu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Atu0110 (polA)
DNA replication proteins [BR:
atu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Atu0110 (polA)
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Atu0110 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Atu0110 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
HHH
IMS_HHH
RNase_T
Transposase_20
Motif
Other DBs
NCBI-ProteinID:
AAK85931
UniProt:
A9CKP5
LinkDB
All DBs
Position
circular:113226..116222
Genome browser
AA seq
998 aa
AA seq
DB search
MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT
PTHFAVIFDYSSKTFRNELYDLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEGFEA
DDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVIEKWGVGPE
KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENIIANA
ELARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEATDSDAS
AIDPANVPVQWGADAHGPDLDAPAAAMAGDVSAEGNNRPASAVAPAKRMIGEGSTPADLT
TARQALFAATKIDTTAYTAIRDIATLDLWIAAAREAGVVAFDTETTSLDPMQAELVGFSL
AIADNGKDASGTDIRAAYVPLTHKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLLEDEA
VLKVAQNLKYDYLLMKRHGVVMRSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYK
DVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWMALKPRLVSERLTKVYERLERPLVP
VLAHMEERGITVDRQILSRLSGELAQKAASFEEEIYELAGERFNIGSPKQLGDILFGRMG
LPGGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPETKR
VHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVL
AHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLA
NQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPS
VKAFNERAAINAPIQGSAADIIRRAMIRIEPALEAEKLSARMLLQVHDELIFEVEEAEIE
KTLPVVVSVMEDAAMPAISMRVPLKVDARAADNWDEAH
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggcgatcatctcttcctcgttgacggctccggtttcattttccgggccttc
catgccatcccgccgctgaaccgcaagtcggacgggctgccggtcaacgccgtctccggc
ttctgcaacatgttgtggaagcttctgaaggatgcgcgcaataccgatgtcggcgtcacg
ccgacccatttcgctgtcattttcgactattcgtcaaaaaccttccgcaacgagctctac
gacctctacaaggccaatcgctctgcgccgccggaagatctggtgccgcaattcggtctg
atccgcgaggcgacgcgcgctttcaaccttccctgcatcgaaacggaaggcttcgaggca
gacgatatcatcgccacttatgcccggcaggccgaggcgatcggcgccgatgtcaccatc
atctcgtccgacaaggatctgatgcagctcgtcaccgccaatgtgcatatgtacgatgcc
atgaaggacaagcagatcggcgttcccgacgtcatcgaaaaatggggcgtcggccccgaa
aagatgatcgacctgcaggcgatgaccggcgattccactgataatgttccgggcattccc
ggcatcgggccgaagacggcggcgcagctgctggaggaatatggcgatctcgatacgctt
ctggcgcgggcaggggaaatcaagcagcagaaacgccgggaaaacatcatcgccaatgcg
gagcttgcccgcctttccagacagctcgtggcgctcagaaccgatgtgccgctggagcag
tctctcgaggaactggtgcttgagccgcagaacggtccgaagctcattgccttcctgaag
gccatggaattcacgacgctgacccgccgcgtcgccgaagcgactgacagcgatgcctct
gccatcgaccccgccaatgtgccggtgcaatggggcgccgatgcccatggtcccgatctc
gatgcgccggccgccgctatggctggtgacgtgtccgccgagggtaacaataggccggct
tcggctgtagctcccgcaaaaaggatgattggcgaaggcagcacgcccgccgatctcacc
acggcgcgacaggcgctttttgccgccaccaagatcgataccaccgcctatacggcgatc
agggatatcgcgacgctggatctctggatcgccgcggccagggaggcgggggtcgtcgcc
ttcgatacggaaacgacctcgctcgacccgatgcaggctgaactcgtcggtttttcgctg
gccattgccgataatggcaaggatgcctcaggcacggatatccgcgccgcctatgtccct
ttgacgcacaagaccggctccggtggcgatctcttcagcgatggcatcaagctcgcagag
ggccaggcgccctttgccgaagcgctggagcgtctgaaggacctgcttgaggacgaggct
gtcctcaaggtcgcgcagaacctcaaatacgattacctgctgatgaaacgccacggcgtg
gttatgcgcagcttcgacgatacgatgctgatttcctatgtgctcgaagccggcaagacc
acgcatggcatggatacgctgtccgaacgctggctgggtcacacgccgatcgcctataag
gatgtaacaggatcgggcaagtcgagcatcaccttcgattttgtcaacatcgacaaggca
accgcctatgcggctgaggatgctgacgtcaccctgcggctgtggatggcgcttaagccc
cggctcgtctcggaacggctaaccaaggtttatgagcggctggaacggcctctcgtgccc
gtattggcacatatggaggagcgcggcatcaccgtcgaccggcagatcctgtcacgcctt
tctggcgaacttgcgcagaaggctgcgagcttcgaagaggaaatctacgagctggcgggg
gagcgctttaacatcggctcgccaaaacagctcggcgatatcctgtttggccggatggga
ctgccgggcggctccaagaccaagaccggccagtggtcgacctcggcgcaggttctggag
gatctcgcggcggaaggggcggagctgccgcgcaagatcgtcgactggcggcagctcacc
aagctgaaatccacctatacggatgcgctacccagctatatccatcccgagacgaaacgg
gtgcacacctcctacgcgctcgcctccaccaccacggggcgcctgtcgtcgtcggagccg
aaccttcagaacatcccggtccgcaccgccgaaggccgcaagattcgcacggccttcatc
tccacgccaggacacaagcttctgtcggccgactacagccagatcgaactgcgcgtgctt
gcccatgtcgccgatatcccgcagctcagaaacgccttcgaaaatggtatcgacattcat
gcgatgaccgcatcggaaatgttcggtgtaccggtggaaggcatgccatcggaagtgcgc
cgccgcgccaaggcgatcaatttcggcatcatctacggcatttccgctttcggcctcgcc
aaccagctcagcatagcccgctcggaggcgggggactatatcaagaaatacttcgagcgg
tttcccggcattcgtgactacatggaagcgaccaaggcgttcgcccgcgagaacggttat
gtcgagacgattttcggccgccgtgcccactatccggaaatccgctcttccaacccatcc
gtgaaagccttcaacgaacgcgcagccatcaatgcgccgatccagggctcggctgccgat
atcattcgccgcgccatgatccgcatcgagccggcgctggaggcggaaaagctctccgcc
cgcatgctgttgcaggtgcatgacgaactcatcttcgaagtcgaggaagcggaaatcgaa
aagaccctgcctgtcgtcgtctcagtcatggaggatgcggccatgccggctatttcaatg
agggtaccgttgaaagtggatgcgcgggcggccgacaattgggatgaggcgcattga
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integrated database retrieval system
