Agrobacterium fabrum: Atu1218
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Entry
Atu1218 CDS
T00070
Name
(GenBank) DNA photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
atu
Agrobacterium fabrum
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu1218
Enzymes [BR:
atu01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Atu1218
DNA repair and recombination proteins [BR:
atu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Atu1218
Prokaryotic type
Atu1218
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
HAD
DUF5848
Phage_Bbp19
Motif
Other DBs
NCBI-ProteinID:
AAK87020
UniProt:
A9CJC9
Structure
PDB
PDBj
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All DBs
Position
circular:complement(1212113..1213552)
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AA seq
479 aa
AA seq
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MSLKTAPVIVWFRKDLRLSDNLALLAAVEHGGPVIPVYIREKSAGPLGGAQEWWLHHSLA
ALSSSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDD
GLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPKSLTAPKVWPK
SEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGRDFPAKPATSL
LSPHLAAGEISPAAVWHATKGLSRHIASNDISRFRKEIVWREFCYHLLFHFPELGEKNWN
DSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMIVASFLIKHLLID
WRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDGDYVRRF
VPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGKARERALAAYAAVKKTT
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctaaaaaccgcccccgtcatcgtctggttccgcaaggatctgcgtctttctgac
aatcttgctttgctcgccgcagtggagcatggcgggccagttattccggtctatatcagg
gaaaaatccgccggtcccttagggggtgcgcaggaatggtggctccaccattcgcttgcc
gctctctcctcctcgcttgaaaaagccggcggccgcctcgtgctcgcaagcggcgatgca
gagaggatactgcgtgacctgatatccgaaaccggggcagacaccgtggtctggaaccgc
cgttatgatccgaccggcatggccaccgacaaggcgctcaaacagaagctccgggacgac
gggctgacggttcgaagcttctccggccagctgctgcatgagccatcgcggctgcagacg
aaatcgggcgggccttaccgcgtctatacgcccttctggcgggcgctggaggggagcgac
gagccccatgcgccggcggatccgccaaagagcctgacagcaccgaaagtatggccgaag
tccgagaaactctccaactggaagctgctacccaccaagccggactgggcaaaggatttc
agcgatatctggacccccggcgaaaccggtgcgttggacaaactcgatgatttcatcgat
ggcgccctgaaaggttatgaagaaggccgggattttccggcaaaacccgcgacgtcgctg
ctttcaccgcatcttgccgcgggtgagatatcgccggcggccgtctggcacgccacgaaa
gggctttcgcgacatatcgcctccaatgatatcagccgtttccgcaaggaaatcgtctgg
cgggaattctgctaccatttgctgttccatttcccggagctgggcgaaaagaactggaac
gacagtttcgacgccttttcctggcgggacgatgaaaaatccttcaaggcctggacgcgc
ggcatgacgggttacccgatcgtcgatgccggcatgcggcaattgtggcaacatggcacc
atgcataaccgggtgcgcatgatcgtggcgtccttcctcatcaaacatctgctgatcgac
tggcggaagggcgagaagtggtttcgcgatacgctcgtcgatgcggacccggcgtccaat
gccgccaactggcaatgggtggcaggttcaggggcggacgcctcgccgttcttccgcatc
ttcaaccccatattgcagggagagaaattcgacggcgatggggattatgtgcgcaggttc
gtgcccgagcttgaaaagctcgagcggaaatacatccacaagccgttcgaagcgcccaaa
gatgcgctgaaaaaggcgggcgtcgaactcggcaagacctatccgctaccgatcgttgac
catggaaaagcgcgggaaagagcgcttgccgcctatgccgcagtgaagaagaccacataa
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