Agrobacterium fabrum: Atu1304
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Entry
Atu1304 CDS
T00070
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
atu
Agrobacterium fabrum
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atu03032
]
Atu1304 (topA)
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu1304 (topA)
Enzymes [BR:
atu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Atu1304 (topA)
DNA replication proteins [BR:
atu03032
]
Prokaryotic type
DNA Topoisomerases
Atu1304 (topA)
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Atu1304 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
AAK87095
UniProt:
A9CJ93
LinkDB
All DBs
Position
circular:complement(1294043..1296721)
Genome browser
AA seq
892 aa
AA seq
DB search
MNVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAK
RMKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDKPVKRVVFNAITKKAV
LDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
ESEIERFVSEEYWNISALLKTPRGDEFEAKLVSADGKRLQSRGIKTGEDANRLKALLEGA
TYVVDTVEAKPVKRNPGPPFTTSTLQQAASSRMGFGASRTMQVAQKLYEGIDIGGETVGL
ITYMRTDGVQIAPEAIDAARLAIGEQFGERYVPEKARFYSTKAKNAQEAHEAIRPTDFTR
TPDQVKRYLDADQLRLYDLIWKRGIASQMASAEIERTTVEILADKNGEKAGLRAVGSVIR
FDGFIAAYTDQKEDGEQSDDGDDEGRLPQINARENLAKQKINASQHFTEPPPRYSEASLI
KKMEELGIGRPSTYAATLKTLSDREYIVIDKRKLIPHSRGRLVTAFLESFFTKYVEYDFT
AALEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDALNEVLAPLVFPKRE
DGSDPRICQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGAEADAAASNEPKALG
ADPMTGEELTLRSGRFGPYIQRGDGKEAKRSSLPKGWKPEDIDHEKALALINLPRDIGKH
PETGKMISAGLGRYGPFLLHDGSYANLESIEDVFSIGLNRAVTVIAEKQAKGPGRSGTPA
ALKELGDHPDGGAITVRDGRYGAYVNWGKVNATIPKGQDPASVTLDESLVLIAERIAKTG
TGGKPAKAKKTTAKKADGEAAAKPKATKAKAATKSKAAAKPKAAAKTKKAAE
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcgttgtcgtagaatctcctgccaaagccaagacgatcaacaagtatcttggt
tcaggctataaggttcttgcatcctttggtcacgtcagagaccttcccgccaaggacgga
tcggtgctgcccgaccaggatttcgaaatgtcctgggaagtcgacagcgcatctgccaaa
cgcatgaaggatattgccgatgcggtaaaatcctctgatggcctttttctcgcaaccgac
cctgatcgcgaaggtgaggccatttcctggcacgttctcgatcttttgaagaagaagcgc
gttctcggcgacaagccggtgaagcgcgtggtcttcaacgccatcaccaagaaggcggtt
ctggacgccatggcgaacccgcgcgacatcgacgtgccgctggtcgacgcctatctcgcc
cgccgtgcactcgattatctcgtcggtttcaacctctctcccgttctgtggcgcaagctg
ccgggcgcgcgttccgccggccgtgtgcagtcggttgcgctgcgtcttgtctgcgaccgt
gaatccgagatcgagcgtttcgtctccgaagaatattggaacatcagcgcgcttttgaag
acaccgcgcggtgacgagttcgaggcgaagctggtttcggccgacggcaagcggctgcaa
agccgcgggatcaagaccggcgaagatgcaaaccggctgaaggcgctgctggaaggcgcg
acctatgttgtcgacacggtcgaggcgaagcccgtcaagcgtaatcccggcccgcccttc
accacctcgacgcttcagcaggctgcgtcttcgcgcatgggctttggtgcctcgcggacg
atgcaggtggcgcagaagctttatgaaggcatcgatatcggcggagaaaccgtcggcctt
atcacctatatgcgtaccgacggcgtacagatagcaccggaggcgatcgatgccgcccgc
ctcgccatcggcgagcagttcggtgagcgttacgtgccggaaaaggcgcgtttctactcc
accaaggccaagaacgcccaggaagcgcacgaagcgatccgcccgactgatttcacgcgc
acaccggaccaggtgaagcgttatctcgatgccgaccagctgcgcctttacgacctgatc
tggaagcgcggtattgccagccagatggcgtccgcagagatcgagcgaacaacggtcgaa
atcctcgcggacaagaacggtgaaaaggccggcctgcgcgccgtcggttccgtcatccgg
ttcgacggcttcattgccgcctataccgaccagaaggaagatggcgagcagagcgacgat
ggtgacgatgaaggccgtctgccgcagatcaatgcgcgcgaaaatctcgccaagcagaag
atcaatgccagccagcatttcaccgaaccgccgccgcgttattcggaagcctcgctgatc
aagaagatggaagagctcggcatcggccgcccttccacctatgccgcgacgctgaagacg
ctgagcgaccgcgaatatatcgtcatagacaagcgcaagcttatcccgcattcacgcgga
cgactggtgacggctttcctggagagctttttcaccaaatatgtcgaatacgatttcacc
gcagcactcgaagaaaagctcgaccgcatttccgccggcgagctggactggaagcaggtg
ctgcgcgatttctggaaggatttcttcgcgcagatcgaagataccaaggaactgcgcgtc
accaacgtgctcgacgcgttgaacgaggttctggcaccgctggtcttccccaagcgcgag
gatggatcggatccgcgcatctgtcaggtttgcggcaccggcaatctttcgctgaagctc
ggcaaatacggcgctttcgtcggttgctccaactatccggaatgcaattacacccgccag
ctcacctccgatggtgcggaagcggatgctgcggcctctaacgagccgaaagcactcggt
gccgatccgatgaccggcgaggagctcacgcttcgctccggccgtttcggaccctatatc
cagcgcggcgacggcaaggaagccaagcgttcatcgctgcccaagggttggaagcctgag
gatatcgaccacgaaaaggcgctggcgctcatcaacctgccgcgcgatatcggcaagcat
ccggaaactggcaaaatgatctctgccggtctcggccgttacggacccttccttctgcat
gacggttcctatgcgaacctcgaaagcatcgaagacgtgttctcgatcggcctcaaccgc
gccgtgaccgtcattgccgaaaagcaagccaagggaccgggccgcagcggcacgccggcg
gcgctgaaagaactgggcgaccatcccgatggcggtgccatcaccgtccgcgacgggcgt
tatggcgcttacgtcaactggggcaaggtcaatgccaccattccgaaggggcaggacccg
gcctcagtgactctggacgagtcgctggtgctgatcgccgagcgcatcgccaagaccggc
accggcggcaagcccgccaaggccaagaagaccaccgctaagaaggccgatggtgaggca
gcggcaaagccgaaagccaccaaggccaaggcggcaaccaagagcaaggcggccgccaag
ccgaaggcagcggccaaaaccaagaaggcagcagagtga
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