Agrobacterium fabrum: Atu4171
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Entry
Atu4171 CDS
T00070
Symbol
deaD
Name
(GenBank) cold-shock dead-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Atu4171 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atu03019
]
Atu4171 (deaD)
03009 Ribosome biogenesis [BR:
atu03009
]
Atu4171 (deaD)
Enzymes [BR:
atu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Atu4171 (deaD)
Messenger RNA biogenesis [BR:
atu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Atu4171 (deaD)
Ribosome biogenesis [BR:
atu03009
]
Prokaryotic type
rRNA helicases
Atu4171 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SBF_like
Motif
Other DBs
NCBI-ProteinID:
AAK89264
UniProt:
A9CG67
LinkDB
All DBs
Position
linear:complement(1289460..1291307)
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AA seq
615 aa
AA seq
DB search
MTDTQGIAPAIAQALEKRGYKDLTPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALAT
TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRNERRA
LERGAHIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDR
RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALR
FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLL
EGAKVSAAWVRPPSVEEIVERDGARLLADPTLSEAVTDDERDFVNKLLEQHGAEKVAAAF
VRLYHSGRSAPEDIFEVALDNTRKPRRDSFETTENNAPRRDRSDFSDSAWFSLSVGRKQS
AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK
QMEGKPEMTGNAREDTRPATAQRKFTKSDNAGAPRDDRKADDKPWKKKKAFGDKPKYEGK
KDKPFEKRGPKPTKG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacccagggtatcgccccggcgatcgcgcaggcgttggaaaaacgcggctac
aaagacttgacccccgtacagcaagccatgcttgcgcccgaacttgccaacaaggacgcg
ctggtttccgcgcagaccggctccggcaagacggttgccttcggcatagcgcttgcgacc
acgctgctgtcggaaaatacacgcttcggtcaggcttccgcaccgctggcgctggcaatc
gcacccacccgcgaactggccatgcaggtcaagcgcgagctggaatggctttatgaattc
gccggtgtctccatcgcatcctgcgtcggcggcatggatatccgcaacgagcgccgggcg
ctggagcgcggcgcccatatcgtcgtcggcacgcctggtcgcctgtgcgaccatatcaag
cgcaatgcactcgatctgtcgtcgatccgcgccgtggtgcttgacgaggccgacgagatg
ctcgatctcggcttccgcgaagatctggaattcattctggaagaatcgcccgacgatcgc
cgcacgctgatgttctcggccaccgtgccgcgcagcatcgccaagctggccgaaagctac
cagaagaacgccgtgcgcattgccaccgcttccgaacagaagcagcatgtcgatatcgaa
tatcgcgcgcttctggtgtcgccttccgatcgcgagaacgccatcatcaacgcgctgcgc
ttttacgaagcccgcaacgccattgtgttctgctccacccgcgccgcggtgaaccacctg
acggcccgcctgaacaatcgaggcttctccgtcgtggctctctccggcgaactgacccag
aacgagcgcacacatgccctgcaggccatgcgtgacggccgcgcccgcgtttgcgtggcc
accgacgtagccgcccgcggtatcgacctgcccggcctggaactcgttatccatgccgac
ctgccgaccaattccgaaacgcttctgcaccgttcaggccgtaccggtcgtgccggccaa
aagggcgtcagcgccatcgtggtaccggtcagtcagcgccgcaaggccgagcgcctgctt
gagggcgccaaggtcagcgccgcatgggtgcgcccgccttcggttgaagagatcgtggag
cgcgatggcgcacgccttctggccgacccgacgctcagcgaagcggtaacagatgacgaa
cgcgatttcgtcaacaagctgcttgaacagcacggcgcggaaaaagtcgccgccgccttt
gtgcgcctttatcattcgggacgttcggcaccggaagacattttcgaagtcgcgctcgac
aacactcgcaagccccgccgcgacagcttcgaaacaaccgaaaacaacgcgccgcgccgc
gaccgctccgatttctccgacagcgcatggttctcgctgtccgttggccgaaagcaaagc
gccgagccgcgctggcttatcccgatgctgtgccgcttcggcaagatcacccgccaggat
atcggcgcgatccgcatgcagcagacggaaaccttcgtggaacttgcggccgacgccgtc
gaccgttttacctccgccatcggcaaggacatgatgctcgaaaagggcattcgcctgaag
cagatggaaggcaagccggaaatgaccggcaacgcccgtgaagacacaaggcccgccaca
gcgcagcgcaaattcacgaaatccgacaatgcgggcgctccccgagacgaccgcaaggct
gacgacaagccctggaaaaagaaaaaagccttcggcgacaagccgaaatacgaaggcaag
aaggacaagcctttcgagaagcgtgggccgaagccgacgaaaggctga
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