Agrobacterium fabrum: Atu5097
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Entry
Atu5097 CDS
T00070
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Atu5097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu5097
Enzymes [BR:
atu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Atu5097
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Atu5097
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AAK90473
UniProt:
A9CLP3
LinkDB
All DBs
Position
At:complement(101139..102191)
Genome browser
AA seq
350 aa
AA seq
DB search
MTKPPRSKPLLRDTEAPIRSKPRRKRNPAQPQLLFNPMPDRVEPALEQLKAHPPQGDQWS
WELKWDGYRLAVHIEPTGVRILTRGGHDWTHRFPAIAEAARALGPATMIIDGEAVVLDDE
GRPDFGLLQKSLGASGKAAGNRASDAILYAFDLMYLDGHDLREMEYRSRRHLLEDTIKAN
DGAIRLSETLDADPNVLLEHIRSLGLEGIVGKHLDQPYRSGRAGDWVKVKCIESEAFMVV
GYEPSMASPAGFASLVVAAYRGDELIHVGNVGTGFKEAEMIGLRKMLDKLRWKRKPPPVP
FTEKTDIVWVEPTLIAEIEFRAWTADGKLRHASYKGLRERQDNADVYRLE
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagccaccgagatcaaagccgctccttcgtgataccgaagccccgatccgctca
aagccgcgtcggaagcgcaatcccgcacagccacagcttctgttcaatccgatgcctgat
cgcgtcgagccggcacttgagcaactgaaggcccatccgccacaaggtgatcaatggagc
tgggagctgaagtgggatggctatcggcttgcggttcatatcgaaccgaccggggtccgc
atcctgacgcgtggcggccatgactggacgcatcggtttccggcaattgcagaggcagcg
cgagcgctcggaccggcgaccatgatcatcgatggcgaggcggtggtgctcgacgacgaa
gggcggcctgattttgggctgcttcagaaatcgttgggtgcttcgggcaaggcggctggc
aatcgagcgtctgatgccatcctctacgcctttgatctcatgtacctcgacggccacgat
ctgcgggagatggagtaccgatcacgccggcatcttctcgaggatacgataaaggcaaac
gacggcgccattcgtctatcggaaacactcgacgctgaccccaacgtcctgctggagcat
atccgcagccttggtcttgaaggcatcgtcggcaagcatctggatcagccctatcgttcc
ggtcgcgccggcgactgggtgaaggtcaaatgcatcgagagcgaagccttcatggtcgtg
ggttacgagccatcgatggcatcgcctgccgggttcgcctcgttggtggtggctgcttat
cgcggcgacgagctcatccatgtcggaaacgtcggcacgggcttcaaagaagccgagatg
atcgggcttcgcaaaatgctcgacaagctgcgctggaaacgaaagccgccgcctgtgccc
tttaccgaaaaaacagatatcgtttgggtcgagccgacactgattgcagagatcgagttt
cgggcgtggacagccgacggtaaattgcgacacgcttcctacaagggcttgcgggaacgg
caagacaatgccgacgtttacaggctcgagtag
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