Acinetobacter thermotolerans: ABEF79_01830
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Entry
ABEF79_01830 CDS
T10604
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
atv Acinetobacter thermotolerans
Pathway
atv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABEF79_01830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atv03019
]
ABEF79_01830
03009 Ribosome biogenesis [BR:
atv03009
]
ABEF79_01830
Enzymes [BR:
atv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABEF79_01830
Messenger RNA biogenesis [BR:
atv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABEF79_01830
Ribosome biogenesis [BR:
atv03009
]
Prokaryotic type
rRNA processing factors
ABEF79_01830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XBD67889
LinkDB
All DBs
Position
complement(381241..384642)
Genome browser
AA seq
1133 aa
AA seq
DB search
MKRMLINATHAEEIRVALVTGQRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIASSYFKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWAQIQSTANSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGQDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSNVRVTVLPHPHLETPHY
EISYNPEGFAPTSYERTEATRSSEKELGYEASEWHLEEEQHALAIASAPAQPQNGKNNKR
RNNQNAQQAPAAAQPAPAQAATAPTASPCAWLENLFVQKQATTIDQSRTANNAAAAIEQM
VNSGAVSRGQFGQVAAPTAAAPVQAAPAVAPAAASNAYLAPSTVVHKPERDQTEKAEHEK
SQRNKKQRNKHKEPRDSQQHDNAQHQVHEEVVQLSRQEQRQEARENKQRGSRRQHHNESA
QQGDNQGNEQQQNVPRRDRRNQPRPERPNRHRDQSVLNEQAAAPAPVVEAPVVNEQQVRV
ELVDAPRQEVTATAMVVNIDQGQSEIVALNGTAPVVAAPAETAPEKAPAVATMAAELEQK
TEAVELTEPPAPAAALEQAAPKAAEKNRASNDPRQRRRDRRAAQGQQAQVEQVRPSQVPT
LGQYTVGTLIRHVYGEDCSVLIEQFGLMATFNRALDKFTQQYNESLAAQAVVEKKPVTRD
VEVAKAQPEPEPAPVLDLTPPKPVATKRVANDPRERRRLAKLAAEQALEQAKQAAQQTEE
KAEAQAEQPLAEPAAEAQAVAAEPAETVEALKTEQVAEAPAQLELAEQAEPATAEAEQST
AEAAPVAEENAAETAKPKAETVEAAPAKAEKSPARPRRPRGRPPKKANTATES
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaacacatgccgaagaaattcgcgttgcacttgtcact
ggtcagcgtctttacgatttcgatttagaaaatcgtacccgtgaacaaaaaaaatcgaat
atctataaaggtcacgtcactcgcgtagaaccttctttggaagcagtattcgttgaatac
ggtgcaggccgccaaggcttcctttcaatgcgagaaatcgcaagctcttatttcaaggca
gatcctcgccagacttcaaatatccgtgaactgattactgaaggcacagaacttctggtt
caggttgaaaaagaagaacgtggcaacaaaggtgctgctctttctactttcatctcactt
gctggtcgttatctggtcttgatgccaaacaacccgaaaggtggtggtatcagccgtcag
atttccggttcagtgcgtgaagaactgaaagaaatgctggcgtctttaaacgtaccacgt
ggtatgagcgtgatcgtacgtactgcaggtattggccgtacgcaagaagaattgcaactt
gacttgcaacatctgctagacctttgggcgcaaatccaaagcacggctaactctggtcca
tcaccaatgctggtacatcaggaagcaggtgtggtgactcgtgccatccgtgactattta
cgtgatgatgttgctgaaatcctgattgactctgaacaagcttacaacgaagcctataac
ttcgtaaaagcggtcatgccacgccagttagacaagctgaaaacctatactttaaatgag
cctttattcgctcactttggtatcgaaagccagattcaaactgcttatgaacgtgaagta
aaactgccttctggcggttcgatcgtgattgaccagactgaagcattggtttcaatcgac
atcaactcagcaaaatcaacccgtggtcaggacgttgaagacaccgcgctgaacaccaac
cttgaagctgcagaagaaattgcacgccagttacgtttacgtgatatcggtggcttggtg
gtgatcgactttatcgacatgaccaaagaccgcaaccagcgtatggtagaagcgaaactg
cgtgaagcaacgcaaagcgaccgtgcacggatccagttcggccagctgtcacgtttcggc
ctgatggaaatgagccgtcaacgtctgcgtccttcacttgaagaagcaactggctatgtt
tgcccacgttgtcatggtaccggtatggttcgtgacctgcgttctctatccctttcaatc
atgcgtaaagtggaagaaattgccctgcgtgaacgtcatggtgaagttcaggttgaagta
ccagtagaaatcgcggcattcctgctcaatgaaaaacgtcacagcctagtatatctggaa
cagacttccaatgttcgtgtgactgtactgcctcaccctcacttagaaactccacattac
gagatttcttataacccagaaggctttgcaccaaccagttatgaacgcactgaagcaacc
cgttcaagcgaaaaagagttgggctacgaagcttctgaatggcatctggaagaagaacag
cacgcacttgctattgcatcggctccagcacaaccgcaaaacggcaaaaacaacaaacgc
cgcaataaccagaatgcacagcaggcacctgctgcagcacaaccagcacctgcacaagct
gctactgctccaactgccagcccatgtgcatggctagaaaacctgtttgtacaaaaacag
gcaaccacaattgatcaatcccgtactgcaaataatgccgcagcagcgattgaacagatg
gtcaacagcggcgcagtaagtcgtggtcagttcggtcaggttgctgcacctacagcagca
gcgccagtccaggcagctccagcagtcgcacctgcagcggctagcaatgcttatctggca
ccatcgactgtagtccacaaacctgaacgtgatcagactgaaaaagctgaacatgagaaa
tcacaacgcaacaagaaacagcgtaacaagcacaaagagccacgtgattctcagcagcac
gacaatgcacaacatcaggtgcatgaagaagtggttcagttgtctcgccaggaacaacgc
caggaagcacgtgaaaataaacaacgtggttctcgccgtcagcaccataacgagtctgca
caacaaggtgataatcagggcaatgagcaacagcaaaatgtgccacgtcgtgaccgccgt
aaccagccacgtccagaacgtccaaatcgccaccgcgatcaaagcgtgctgaacgagcaa
gctgctgcgccagcgccagtggttgaagctccggtcgtgaatgaacagcaagtgcgtgtc
gaacttgttgatgcaccgcgtcaggaagtaactgcaactgcgatggtcgtgaacattgac
cagggtcaaagcgaaatcgtggcactgaacggtactgcacctgtggttgctgctccagct
gaaactgcacctgaaaaggcgccagcggtagctaccatggcagcagaactggaacagaaa
actgaagcggttgaactgactgaaccacctgctccagcggctgcacttgaacaggcagcg
ccgaaagctgcggaaaaaaaccgtgccagcaatgacccacgtcaacgtcgtcgtgaccgt
cgtgccgcacaaggtcagcaggctcaggttgaacaagtgcgtccaagtcaggtaccaacc
cttggtcaatacactgtcggcacgctgatccgtcatgtttacggtgaagactgctcagtg
ctgatcgaacagttcggcctgatggcaaccttcaaccgtgcactggacaagttcactcaa
cagtacaacgaaagccttgcggctcaagcagttgttgagaagaaacccgtaacgcgtgat
gtagaagtagcgaaagctcagcctgaaccagagccagctccggtactggatctgactcca
cctaaacctgtagcaaccaaacgtgtagcgaatgatccacgtgaacgtcgtcgtctggca
aaacttgctgcagaacaagcacttgagcaggctaaacaggcagctcaacaaactgaagaa
aaagctgaagcacaagctgaacagccgctagctgaaccggctgcagaagctcaagcagtt
gcagcagagcctgctgaaactgtagaggcgctgaagactgaacaggtagctgaagctcct
gcacagctagaattggctgaacaggctgaaccagcaactgcggaagctgagcaatcaaca
gcagaagcagcgccagttgcagaagaaaatgcagctgaaacagctaagccaaaggctgaa
acagtggaagcagcaccagcgaaagctgagaaatcgcctgcccgcccacgtcgtccacgt
ggtcgtccaccgaaaaaagccaatactgcaactgaatcataa
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