Pseudazoarcus pumilus: C0099_03335
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Entry
C0099_03335 CDS
T05265
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
atw
Pseudazoarcus pumilus
Brite
KEGG Orthology (KO) [BR:
atw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atw03019
]
C0099_03335 (hrpA)
Enzymes [BR:
atw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C0099_03335 (hrpA)
Messenger RNA biogenesis [BR:
atw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C0099_03335 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
DEAD
AAA_19
ABC_tran
HA2_N
nSTAND3
NACHT
AAA_30
T2SSE
PhoH
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AUN96324
UniProt:
A0A2I6SAP2
LinkDB
All DBs
Position
687022..690978
Genome browser
AA seq
1318 aa
AA seq
DB search
MSADRPRLHALVRRLRRDKGERRARTQADLDALAERSRARLAERVARAPRPEYPPELPVT
LRREEIAAAIREHQVVIVCGETGSGKTTQLPKICLELGRGAAGLIGHTQPRRLAARATAT
RIAQELGSQLGETVGFKIRFTDRVSPASYVKLMTDGILLAETQGDPDLSAYDTLIIDEAH
ERSLNIDFLLGYLRTLLPRRPDLKVVVTSATLDAERFARHFARDGRPAPVIEVSGRLYPI
EVRHRPLEEEDARGKGRELTDAIVDAVEEAQRIGPGDVLVFLPGEREIREAAEALRKSHH
AAAMEVLPLFARQSAQEQSRVFSGGRGRRVVLATNVAETSLTVPGIRYVVDTGLARVKRY
SYRNKVEQLQIEKIAQSAAKQRAGRCGRVMDGVCIRLYGEDDFASRPEHTDPEILRSSLA
GVILRMRSLRLGAVEDFPFLDAPQPRMIADGYQLLAELGAVTDDDARELTATGEELARLP
LDPRVGRMILAARDRGCLAEVLVIAAALSVQDPRERPQESPGAADQAHAKFRGREQDQRS
EFLWYRNLWQAWEHVVRHESGSRQKAWCRQHFLNHLRMREWRDVHGQLATLCGEHGWKPN
QIAASYEVIHKALLAGLLGNVGTRAEEASGPQAGSYLGPRGVRFWPHPGSSLAKKAGKWI
VCAELVETSRLFGRCIARIEPEWVEEVGAHLIRRQVFEPHWSKSAGSVRAWERGTLYGLV
LYPRRAVGYREIDPALCRELFIREALVQGEIADGPARDMGFLQHNLKLVAQIERLEHKSR
RPDVLVDDTLIEAFYEDRVPDDVLDVASFEKWRKSAERAEPRLLHLTREQLMRHEAAGIT
TERFPAHFEVLGQKLKLTYLHEPGASDDGVTLSVPLAMLNQIPAARCEWLVPGLLEEKVL
ALLKTVPQKHRHRLQPLAESAAAFVEAAEDGEFDRDEPLLRALQNFVEQRVSLKLPLEAF
RPENLRPHAAMNFRVIDEHGRVLGQSRNLMELRARFAREVAERFRRAEFEAPVAEVTTPE
AADAPPTPAPVADGALQGLTDWSFGALPELLEVRVAGREVVGFPALHDDGDSVSLRPYDT
PEEAVRVHSRGLARLFAINLKDQVRAIERLPGLRELSLAFMPFGSEADLKRQLVVATLER
VCLVEPLPQDADAFALRCKEAKSRTGLVAQEFMRLAQQVLAERAALEKRLASLRGFPEVV
EDVRTQVGALLVKDFLVAHPWARLAHFPRYLQAAVLRIDKLRANPERDARAMADWHSLAR
PFERELTARRRAGVVEPALEEFRWMLEELRVGLFAQELRTPMPVSVKRLQKIWDTRPR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
ctgagtgcggatcggccgcgtctgcacgcgctcgtgcgtcgcctgcggcgcgacaagggc
gagcgccgtgcaaggactcaggccgacctcgacgcgctcgccgagcgctcgcgtgcgcgc
ctggccgagcgcgttgcgcgcgccccccggcccgagtacccgccggaactgccggtcacg
ctgcggcgcgaggagatcgccgcggcgatccgcgaacatcaggtggtcatcgtgtgtggc
gagaccggctcgggcaagaccacgcagttgcccaagatctgcctggaactggggcgcggc
gcagccggcctgatcggccatacccagccgcgtcgtctggccgcgcgcgccaccgccacc
cgcatcgcgcaggagctgggcagccagctcggcgagaccgtcggtttcaagatccgcttc
accgaccgcgtctcgccggcgagctacgtcaagctgatgaccgacggcatcttgctggcc
gagacccagggcgacccggacctgtccgcctacgacaccctcatcatcgacgaggcgcac
gagcgcagcctcaacatcgactttttgctgggctatctgcgcaccctgctgccgcgccgg
ccggacctcaaggtcgtcgtcacctcggccacgctcgacgccgagcgcttcgcgcgtcac
ttcgcgcgcgatggccggccggcaccggtgatcgaggtctccgggcggctctacccgatc
gaagtgcgccaccgcccgctcgaggaggaggacgcacgcggcaaggggcgtgagctgacg
gatgccatcgtcgacgcggtcgaggaggcgcaacgcatcggcccgggcgacgtgctggtg
ttcctgcccggcgagcgcgagatccgcgaggccgcggaagccctgcgcaaatcccatcat
gccgcagcgatggaggtgctgccgctgttcgcgcgccagtcggcgcaggagcagtcgcgc
gtgttctcgggcgggcgcgggcggcgcgtggtgctggcgaccaacgttgccgagacctcg
ctgaccgtgccgggcatccgctacgtggtcgataccgggctggcgcgcgtcaagcgctat
tcctaccgcaacaaggtcgagcagctgcagatcgagaagatcgcgcagtcggccgcgaag
cagcgagcagggcgttgcgggcgcgtcatggacggggtgtgcatccggctctacggcgag
gatgatttcgcctcgcgccccgagcacaccgacccggagatcctgcgctcgtcgctggct
ggcgtgatcctgcgcatgcgctcgctgcgtctgggtgcggtcgaggacttcccgtttctc
gacgcaccgcagccgcgcatgatcgcggacggctaccagttgctcgcagaactgggtgcc
gtgaccgatgatgacgcgcgcgaactcacggccaccggcgaggaactggcgcgtctgccg
ctggacccgcgggtggggcgcatgatcctcgccgcgcgcgatcgcggctgtctggccgag
gtgctggtgatcgccgccgcactgtcggtgcaggatccgcgcgagcgcccgcaggagtcg
cccggtgcggccgaccaggcgcacgcgaaattccgcgggcgcgagcaggatcagcgttcg
gaattcctgtggtatcgcaacctgtggcaggcttgggagcacgtcgtgcgccacgagtcc
ggcagccggcagaaggcctggtgccggcagcacttcctgaatcatctgcgcatgcgcgag
tggcgtgacgtgcatggccagctcgcgaccctgtgcggcgaacatggctggaagcccaac
cagatcgccgccagttatgaagtcatccacaaggcgctgctggcgggcctgctgggcaac
gtcggcacgcgcgccgaggaggccagcggtccgcaggccggcagctatctcggcccgcgc
ggcgtgcgcttctggccgcatccgggctccagtctggccaagaaggccggcaaatggatc
gtgtgtgcggaactggtcgagacctcgcgcctgttcggccgctgcatcgcgcgcatcgaa
cccgaatgggtcgaggaggttggcgcgcatctgatccggcgtcaggtcttcgagccgcac
tggtccaagagcgcaggcagcgtgcgcgcctgggagcgcggcacgctgtacgggctggtg
ctctatccgcggcgcgcggtgggttaccgtgaaatcgacccggcgctgtgccgcgagctg
ttcatccgcgaggcgctggtgcagggcgagatcgccgacggtccggcgcgcgacatgggc
ttcctgcagcacaacctcaagctggtggcgcagatcgagcggctcgaacacaagtcgcgc
cgtcccgacgtgctcgtcgacgacacgctgatcgaggccttctacgaggaccgcgttccc
gacgatgtgctcgatgtcgcgagcttcgagaaatggcgcaagagcgccgagcgggccgag
cccaggctgctgcacctgacgcgcgaacagctgatgcgccacgaagcggccggcatcacg
accgagcgctttccggcgcatttcgaggtcttgggccagaagctcaagctcacctatctg
cacgagccgggcgcgagtgatgacggcgtgacgctgagcgtgccgctggcgatgctcaac
cagatcccggccgcgcgctgcgaatggctggtgcccgggctgctcgaggagaaggtgctg
gcactgctcaagaccgtgccgcagaagcaccgccaccgcctgcagccgcttgccgagagt
gcggcggccttcgtcgaggccgccgaggacggcgagttcgaccgtgacgagccgctgctg
cgcgcgctgcagaacttcgtcgagcagcgcgtttcgctgaagctgccgctcgaggccttc
cgtccggagaacctgcggccgcacgccgcgatgaattttcgcgtgatcgacgagcatggc
cgcgtgctcggccagtctcgcaacctgatggagttgcgcgcgcgcttcgcacgcgaggtg
gccgagcgctttcgccgcgccgagttcgaggcgccggtggccgaggtcacgacaccggag
gcagccgacgcgccgccgacgcccgccccggtcgcggacggggcgctgcagggactcacc
gactggagcttcggcgcgctgcccgaactgctcgaggtgcgcgtggccggacgcgaggtg
gtgggttttccggcgctgcatgacgatggcgacagtgtctcgctgcggccctacgacacg
cccgaggaggctgtgcgcgtgcacagccgcgggctcgcgcgcctgtttgcgatcaacctg
aaggatcaggtgcgtgcgatcgagcgcctgcccgggctgcgcgaactgtcgctggccttc
atgcccttcggtagcgaggccgacctgaagcgccagctggtggtcgcgacgctcgagcgc
gtgtgcctggtcgagccgttgccgcaggatgccgacgcctttgccttgcgctgcaaggag
gccaagtcgcgaaccggcctggtcgcgcaggagttcatgcgcctggcgcagcaggtgctg
gccgagcgcgctgcgctggaaaagcgtcttgcctcgctcaggggttttccggaagtcgtc
gaggacgtgcgcacgcaggtcggcgcgctgctggtgaaggattttctcgttgcccatccg
tgggcgcggttggcgcattttccacgctacctgcaggcggcggtgctacgcatcgacaag
ctgcgcgcgaacccggaacgtgatgcccgcgcgatggccgactggcactcgttggcacga
cccttcgagcgtgaactgacggcgcgccggcgcgccggcgtggtcgagccggcattggag
gaatttcgctggatgctcgaggagttgcgcgtgggcctgttcgcgcaggagttgcgcacg
ccgatgccggtcagcgtcaagcgtttgcagaagatctgggacacacgaccgcgctga
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