Pseudazoarcus pumilus: C0099_03555
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Entry
C0099_03555 CDS
T05265
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
atw
Pseudazoarcus pumilus
Pathway
atw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0099_03555 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atw03019
]
C0099_03555 (rnr)
03016 Transfer RNA biogenesis [BR:
atw03016
]
C0099_03555 (rnr)
Enzymes [BR:
atw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C0099_03555 (rnr)
Messenger RNA biogenesis [BR:
atw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C0099_03555 (rnr)
Transfer RNA biogenesis [BR:
atw03016
]
Prokaryotic type
tRNA degradation factors
C0099_03555 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
AUN94097
UniProt:
A0A2I6S4D7
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All DBs
Position
731523..733955
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AA seq
810 aa
AA seq
DB search
MNRKSKNETSNELSAVRRADPFFEREREQYDHPLPSREYVEQILAERGVPMRFEELCEAL
DVGEEEFDLFERRVRAMERDGQVLRNRRGTFILPDKADLVRGRVQGHADGFGFLVREDKQ
PDLFLGPKEMREVLHGDRVIARITGTDRRGRPEGKIVEILERGNMRVVGRVLDEHGVLLV
VPEDRRIAQDILVAPGGKRPRAGQVVTVELIEQPTKVSQPIGRVVEVIGNYADPGMEIEI
ALRKHALPFVFSPEARAQARKLPEAVRRKDRKGRVDITELPLVTIDDETAKDFDDAVYCE
RSGRGYRLIVAIADVSHYVEPGTPLDVEAFERGNSVYFPRRVIPMLPEKLSNGLCSLVPG
IDRLAMVCDMNLDARGEIVDYSFYEGVIFSHARLTYNKVAAALYDEDPDMRRELAPLLPH
LENLDKLFRVLLKARAKRGAIDFETTETRMIFDDNGKIERIVPQVRNDAHRLIEECMLAA
NVCASDFLQSREQPALYRIHEGPAPDRLERLRGFLREFGLTLGGGDDPHAKDYGTLLAAV
RERPDAALLQTVMLRSLKQAMYSPDNVGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAAL
AGTHYSPGDWEQVGLHCSGTERRADEATRDVVAWLKCWFMQDRVGEEFVGSVSSVVPFGL
FVALDDIFIEGLVHISDLGSDYFHYDETRHELAGERTGTRYRLSDRVHVQVVRVDLETAK
IDFRLIEGEARPTERSGKTARDREAAAPKTDAVSVPRKGRGRSSSASSKGKKAKAEAAKP
AAIPSGDKPAAKKRNRRGGSRGGRKAANNG
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaaaaagcaaaaacgaaacttcgaacgaactcagcgcagtacgccgcgccgac
cccttcttcgaacgcgaacgcgagcaatacgatcatccgctgcccagccgcgagtacgtc
gagcagattctcgccgaacgcggcgtgccgatgcgcttcgaggagctgtgcgaggcgctg
gacgtgggcgaggaggagttcgacctgttcgagcgccgcgtgcgcgcgatggaacgcgac
ggccaggtgctgcgcaaccggcgtggcaccttcatccttccggacaaggccgatctggtg
cgtggtcgcgtgcagggccacgccgacggcttcggcttcctggtgcgtgaggacaagcag
ccggatctgttcctcggtcccaaggaaatgcgcgaggtgctgcacggggatcgcgtcatt
gcgcgcatcaccggcaccgatcgccgcggccgcccggaaggcaagatcgtcgagatcctc
gagcgcggcaacatgcgcgtggtcgggcgcgtgctcgacgagcacggcgtgctgctggtg
gtgcccgaggatcgccgcatcgcgcaggacatcctggtcgcgccggggggcaagcggccc
cgcgccgggcaggtggtcacggtcgaactgatcgaacaacctaccaaggtctcgcagccc
atcgggcgtgtggtcgaggtcatcggcaactatgccgatcccggcatggagatcgagatc
gcgctgcgcaagcacgcgctgcccttcgtgttctcgcccgaggcgcgtgcccaggcgcgc
aagctgcccgaggccgtgcgtcgcaaggatcgcaagggacgcgtggacatcaccgaactg
ccgttggtgaccatcgacgacgagaccgccaaggacttcgatgacgccgtctactgcgag
cgttccgggcgcggctaccggctgatcgtcgcgatcgccgacgtgtcgcattacgtcgaa
ccgggtacgccgctcgacgttgaagccttcgagcgcggcaactcggtgtatttcccgcga
cgcgtcatcccgatgctgcccgagaagctgtccaacggcctgtgctcgctggtgccgggc
atcgatcggctggcgatggtgtgcgacatgaatctcgacgcgcgcggcgagatcgtcgac
tacagcttctacgaaggcgtgatcttctcccacgcacggctgacctacaacaaggtcgcc
gctgcgctctacgacgaggatccggacatgcggcgcgagctcgcgccgctgctgccgcat
ctggagaacctcgacaagttgtttcgcgtgctgctcaaggcacgcgccaagcgcggcgcg
atcgacttcgagacgaccgagacgcgaatgatcttcgacgacaacggcaagatcgaacgc
atcgtgccgcaggtgcgcaacgacgcccaccgcctgatcgaggaatgcatgctggcggcc
aacgtttgcgcgtccgatttcctgcagtcgcgcgagcagccggcgctctaccgcatccac
gaaggccccgcgcccgatcgcctggagcgcctgcgcggtttcctgcgcgagttcggcctg
accctgggcggcggcgacgatccgcacgccaaggactacggcacgctcctcgccgcggtg
cgtgagcgcccggacgcggcactgcttcagaccgtgatgctgcgctcgctcaagcaggcc
atgtacagcccggacaacgtcggccacttcggtctggcctacgaggcctacacccacttc
acttcgcccatccggcgctatccggacctgctcgtacaccgtgcgatcaaggccgcgctc
gcgggtacgcactacagcccgggtgactgggagcaggtcggcctgcactgctcgggtacc
gaacggcgagcggacgaggccacgcgcgacgtcgtcgcctggctcaagtgctggttcatg
caggatcgcgtcggcgaggagttcgtcggcagcgtctcgtcggtcgtgccctttggcctg
ttcgtcgccctcgacgacattttcatcgagggtctggtgcacatctccgatctgggctcg
gactatttccactacgacgagacccgccacgaactggccggcgagcgcaccggtacgcgc
taccgtctgtcggaccgcgtgcacgtgcaggtggtgcgcgtcgatcttgagaccgccaag
atcgacttccgcctgatcgagggcgaggcccgcccgaccgagcgcagcggcaagaccgca
cgtgatcgcgaggcggcggccccgaagacggacgccgtgagcgtgccgcgcaaggggcgc
ggccgctcgtcgagcgcatcgtccaaggggaagaaggccaaggccgaggcagcgaagccg
gcagcgatcccgtccggtgacaaacctgcagcgaagaagcgcaaccgccgcggcggctcg
cgtggcggcagaaaggcggcgaacaatggctga
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