Pseudazoarcus pumilus: C0099_05060
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Entry
C0099_05060 CDS
T05265
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
atw
Pseudazoarcus pumilus
Pathway
atw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0099_05060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atw03019
]
C0099_05060
03009 Ribosome biogenesis [BR:
atw03009
]
C0099_05060
Enzymes [BR:
atw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C0099_05060
Messenger RNA biogenesis [BR:
atw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C0099_05060
Ribosome biogenesis [BR:
atw03009
]
Prokaryotic type
rRNA processing factors
C0099_05060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AUN94361
UniProt:
A0A2I6S533
LinkDB
All DBs
Position
complement(1055476..1058475)
Genome browser
AA seq
999 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRLEPSLEAAFVDY
GSERHGFLPFKEIARSYFSNNGEGGKARIQDVLSVGQELIVQVEKDERGNKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRVEGDERAELRDVMDQLEVPAGMSLIARTAAIGRTAEELQ
WDLNYLLQLWQAIAGAATSQSGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDDVFEQAR
QFMAHVMPDNVVKVKRYSDDVPLFSRFQIEHQIESAYARQVTLPSGGAVVIDHTEALVSV
DVNSGRSTKGSDIEETALRTNCEAADEIARQLRLRDLGGLIVIDFIDMESAKNQRDVENR
LREALHHDRARVQTSKISRFGLLELSRQRLRPALSESSYEPCPRCHGTGHIRNTESSALH
ILRILEEEAMKENTGAVHLQVPVDVATFLLNEKRTDVARIELRHRIQLIVVPNRHMETPQ
FEIIRLRHDQLDVEDIALASYQMVAEPPPDEARLPGEANARPARAEAVVKGISPSQPAPS
APAPQAEVATEVKAASVATSEAGNDKGLIDRLFGWLRRTPTPVVEKEEPVPAVTEKPRRG
QDGRRGERGERSERGDRGDGRRGGRGRRDAQREERQDDGQNGRGRGRRAEPAEQREVSDA
SDSGNGGNRRRGRSSRNEPRPTEAPTEAQAVEERVSVAAADTADTTKTAEDKHAGSDNGE
NADTGAPRRRRRRGRRGRGGADRAEAGSDSNVEQTEDDVAYGADAVASAATSEAAATQEP
ALTVAEPAPETAASPDREAERQAEPGKSAAQSAAGHADVSETVATETPAAQARADDSPVA
DERADAVQTQPPAEEQAYARNAAEPAEAEPAEAEPAEAEPAEVEPVEAEPSAAQEVPVDT
AQTTVAQAPEAEREPVAEMASEAAPAIESAPPVREDKSEAPIDMAKPLAEAGLVLIETRS
DVTPSNGAQTRTETPLGRRPRRPQPVAEESLQQVETQNK
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttgttcaatgcgacgcaggccgaggaactccgcgtcgcgatcgtcgat
ggtcagaaactgatcgacctcgacatcgaatcggccgccaaggaagaacgcaagagcaat
atctacaaggcggtgatcacccgcctcgagcccagcctcgaggccgccttcgtcgattac
ggttccgagcgtcacggtttcctgccgttcaaggaaatcgcccgcagctatttctccaac
aacggtgaaggcggcaaggcgagaatccaggacgtgctctccgtcggccaggaactgatc
gtccaggtcgagaaggacgagcgcggcaacaagggcgcggcgctcaccacctatatctcg
ctggccggccgctacctcgtcctgatgcccaacaacccgcgcggtggcggcgtttcgcgc
cgcgtcgagggcgacgagcgcgccgagttgcgcgacgtcatggaccagctcgaagtcccc
gccggcatgagcctgatcgcgcgcaccgcggcgatcggccgcaccgccgaagaactgcag
tgggatctgaactacctgctgcagctgtggcaggcgatcgcaggcgcggcgacctcgcag
agcggcgccttcctgatctaccaggaaggcagcctcgtgatccgcgcgatccgcgactac
ttccagccggacatcggcgagatcctgatcgacaccgacgacgtgttcgagcaggcgcgc
cagttcatggcccacgtgatgccggacaacgtggtcaaggtgaagcgctacagcgacgat
gtgccgctgttctcgcgcttccagatcgaacaccagatcgaatcggcctacgcgcgccag
gtcaccctgccctcaggcggcgcggtggtcatcgaccacaccgaggcgctggtttcggtc
gacgtcaactcgggccgctccaccaagggctcggacatcgaggaaaccgcgctgcgcacc
aactgcgaggcggctgacgagatcgcccgccagctgcgcctgcgcgacctcggcggcctc
atcgtgatcgacttcatcgacatggagtcggcgaagaaccagcgcgacgtcgagaaccgc
ctgcgcgaggccctgcaccatgaccgcgcgcgcgtgcagaccagcaagatcagccgcttc
ggcctgctcgagttgtcgcgccagcgcctgcgcccggccctgtccgaatccagctacgag
ccctgcccgcgctgtcacggcaccggccacatccgcaataccgaatcgtccgcgttgcac
atcctgcgcatcctcgaagaggaagcgatgaaggaaaacaccggcgcggtgcacctgcag
gtgccggtggacgtcgcgaccttcctgctcaacgagaagcgcaccgacgtggcgcgcatc
gaactgcgtcatcgcatccagctcatcgtcgtgcccaaccggcacatggagacgccgcag
ttcgagatcatccgactgcgccacgaccagctcgacgtcgaggacatcgcgctcgcaagc
taccagatggtcgccgagcccccgcccgacgaggcccgcctgcctggcgaagccaacgcc
aggccggcccgtgccgaggcggtcgtgaaaggcatctcgccctcccagcccgcgcccagc
gccccggcacctcaggcggaagtcgccaccgaggtcaaggcagcaagcgtggcaacgtcc
gaagccggcaacgacaaggggctgatcgaccgcctgttcggctggctgcggcgtacgccc
accccggtcgtcgaaaaggaagaacccgttcccgcggtcaccgagaaaccgcgccgcggc
caggatggccgtcgtggcgaacgcggggagcgaagtgaacgcggagatcgcggtgatggc
cgtcgcggcggacgtggtcgccgcgacgcgcagcgcgaagagcgccaggacgacggccag
aacggacgcggacgcggccggcgtgccgaaccggccgagcagcgcgaagtgtccgacgct
tcggactcgggcaacggcggcaaccgtcgacgcggccgcagttcgcgcaatgaacccaga
ccgaccgaagcgccgaccgaggcgcaagcggtcgaagagcgcgtcagcgtagccgctgcc
gacacggcggacacgaccaagaccgccgaggacaagcatgctggcagcgacaacggtgaa
aacgccgacacgggtgcaccgcgtcgtcgccgtcgccgcggtcgtcgcggtcgcggcgga
gccgatcgagccgaggcgggcagcgacagcaacgtcgagcagaccgaggacgacgtcgcc
tacggtgcggatgctgtggcgagtgctgcgaccagcgaagccgcagcaacgcaagagccc
gccctgaccgtggccgagcccgcgcctgaaaccgctgcctcgcctgatcgcgaagccgag
cggcaggccgaacccggaaaatcggccgcgcaatccgcggccgggcacgccgatgtgtcc
gagaccgtcgccaccgagacgcccgccgcgcaagcacgcgccgatgactcgcccgtcgct
gacgagcgcgccgacgcagtgcaaacgcagcccccggccgaggaacaggcgtacgcccgc
aacgccgccgagcctgccgaagccgagcctgccgaagccgagcctgccgaagccgagcct
gccgaagtcgagccggtcgaagccgagccgagcgcggcccaagaggttccggtcgacacc
gcgcaaacgactgtagcgcaagcgcccgaggccgagcgcgagcccgtggcagagatggcg
agcgaagctgcaccggcaatcgagagcgcgccccccgtgcgcgaggacaagtcggaagcc
cccatcgacatggccaagccgctggccgaggccggtctggtgctgatcgagacgcgctcc
gacgtgacgccgtccaacggcgcgcagacgcgcaccgaaaccccgctgggacgtcgtccg
cgtcgcccgcagccggtggctgaagagtcgctgcaacaggtcgagacgcagaacaagtaa
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