Pseudazoarcus pumilus: C0099_09325
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Entry
C0099_09325 CDS
T05265
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
atw
Pseudazoarcus pumilus
Pathway
atw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0099_09325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atw03019
]
C0099_09325
Enzymes [BR:
atw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C0099_09325
Messenger RNA biogenesis [BR:
atw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0099_09325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
UvrD-helicase
Shikimate_DH
CMS1
Motif
Other DBs
NCBI-ProteinID:
AUN95119
UniProt:
A0A2I6S794
LinkDB
All DBs
Position
complement(1938636..1940003)
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AA seq
455 aa
AA seq
DB search
MTNQTEFTGLGLAAPLLRAISEAGYTTPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFV
LPVLHRLLDKPAANPKAGRPRCLILTPTRELAAQVEESVQTYGKHVDLTSMVMFGGVGIN
PQIQALRRRVDLLVATPGRLLDHIGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLAL
LPKQRQNLLFSATFSDEIRQLANGLLSNPGCVEVARRNTASELVDQSVYMVGQKQKRELL
AWLIRENRWEQVLVFTRTKHGANKLAEYLGKNGIPSAAIHGNKSQSARTRALGDFKDGSL
PVLVATDIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDGEETRL
LAGIERLIKRRIERAEATGFVPAAPGTHVEVSDARGPRPAPRSHGRPGQSQPRGGQNAGR
RAGGGGNGQPRGNGGGNGGRSDGARRPRNPGGPRG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatcaaaccgaattcaccggtctcggactggccgcgcccctattgcgtgcgatt
tccgaagccggctacaccacgccgacgccgatccaggcgcaggccattccgctggtgctg
gccgggggcgacctgcttgccgccgcgcagaccggtaccggcaagaccgccggcttcgtg
ctgccggtgctgcaccgcctgctcgacaagcccgctgccaaccccaaggccggccgcccg
cgctgcctcatcctgaccccgacgcgcgagctcgccgcgcaggtcgaggaatccgtgcag
acctacggcaagcatgtcgatctgacctcgatggtgatgttcggcggtgtcggcatcaat
ccgcagatccaggccctgcgccgccgcgtcgacctgctggtggccacgccgggccgtctg
ctcgatcacatcggccagaagacgctggatttgtccggcgtcgagatcctggtgctggat
gaggccgaccgcatgctcgacatgggcttcatccgcgacatccgcaaggtgctcgcgctg
ctgcccaagcagcgtcagaacctgctcttttcggcgaccttctcggacgagatccgtcag
ctcgccaacggcctgctgagcaaccccggttgtgtcgaggtcgcgcgccgcaacaccgct
tccgagctggtcgaccagtcggtctacatggtcggacagaagcagaagcgcgaactgctg
gcctggctgatccgcgagaaccgctgggagcaggtgctggtgttcacgcgcaccaagcat
ggcgccaacaagctcgccgagtatctgggcaagaacggcattccgtcggccgcgattcac
ggcaacaagagccagtcggcgcgcacgcgcgcgctcggcgacttcaaggacggcagcctg
ccggtgctggtcgcgaccgacattgccgcgcgcggtctggacatcgaccagctgccgcag
gtggtcaacttcgaactgcccaacgtcgccgaagactatgtgcaccgcatcggccgtacc
ggccgtgccggcgcaacgggtgccgcggtgtcgctggtcgatggcgaggaaacccgcctg
ctggccggcatcgagcgcctgatcaagcgtcgcatcgagcgcgcagaggccaccggcttc
gtgccggccgcgccgggcacgcacgtcgaagtgtccgacgcgcgtggtccgcgcccggcg
ccgcgcagccatgggcgccccggccagagtcagccgcgaggcggtcagaatgccggtcgt
cgcgcgggtggcggtggcaacggccagccgcgtggcaacggcggcggcaatgggggtcgc
agcgacggcgcccgtcgtccgcgcaatccgggcggtccgcgcggctga
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