Acidithiobacillus thiooxidans: GCD22_00405
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Entry
GCD22_00405 CDS
T06281
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
atx
Acidithiobacillus thiooxidans
Pathway
atx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GCD22_00405 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atx03021
]
GCD22_00405 (rpoC)
03400 DNA repair and recombination proteins [BR:
atx03400
]
GCD22_00405 (rpoC)
Enzymes [BR:
atx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GCD22_00405 (rpoC)
Transcription machinery [BR:
atx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GCD22_00405 (rpoC)
DNA repair and recombination proteins [BR:
atx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GCD22_00405 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Tail_completion_gp17
Motif
Other DBs
NCBI-ProteinID:
QFX94929
UniProt:
A0A5P9XML0
LinkDB
All DBs
Position
375318..379484
Genome browser
AA seq
1388 aa
AA seq
DB search
MDALKDLLKLFKQNDQQEEFDAIRIGIASPDKVRSWSFGEVKKPETINYRTFKPEREGLF
CAKIFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQARVRRERMGHIELASPVAHIWFL
KSLPSRMGMILDMPLRDIERVLYFEAYVVVDPGVTALERGLIMSEDQYLDALEEHGDEFV
AKMGAEGIRDLLRGIPLVQEIERIRNELRESNSDTKTKKLSKRLKILEGFESSGNRPEWM
ILEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKR
MLQEAVDALLDNGRRGRAISGPNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELRLHQCGLPKKMALELFKPFIFNKLEERGLATTIKAAKRLVEQEKPEVWDILEEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLSLEAQ
LEARTLMMSTNNILSPANGDPVIVPSQDIVLGLYYASQERADAKGTGGMFSDIREVRRAY
ETGQVGLHARITVRFRGERIETTAGRALLGDILPEGLSFSVINRVLKKKVIGELINTCYR
TLGIKDTVIFADQLMYTGFRMATRAGISFGAGDMVTPQEKEGILSRSEDEVKAIQAQYTS
GLVTEGERYNKVVDIWSRATDEVAKAMMDRVSKETVELPDGSKVQQDSFNSIFMMADSGA
RGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT
ANSGYLTRRLVDVTQDLVVVERDCGSEEGLPMTSLVEGGEVIEPLRDRVLGRVLSEDLLH
PNTGEIVIPRNTMLAEQHLGQLDALGVDALKVRSPLTCHSRHGVCALCYGRDLARGHLVN
AGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAQSSLDVKQGGVFHYQSNLRIVTHS
SGRHVVVGRNGEVTVTDEQGREKERYKMPYGATLLVNDNTPVTAGMRVAEWDPHTRPIVS
EVGGRISLKDAVEGASVAIQTDEITGLSTLMVIDTKQRPPQGRDLRPVIGILDEKGQDLK
LPGTDLPARYFLPARAIIAVQEGMEIFPGDILARLPAGTTKTRDITGGLPRVAELFEARR
PKDFAIIAEHEGIVGFGKDTKGKQRLIITDENAEQHEYLIPKGRHVTVYEGERVVPGEQL
VEGQPVPHDILRVLGVQALANYIVDEVQDVYRLQGVRINDKHIEVILRQMLRRVEVTSSG
DGTFITGDQVDRARVEDENAQLERDGKEPARFKPMLLGITKASLSTESFISAASFQETTR
VLTEAAVSGKLDDLRGLKENVIVGRLVPAGTGLAYHEHRRRLNRGEVLATAGESSSNAAE
ALLNSENR
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgttgaaagacttactgaagctctttaaacaaaacgatcagcaagaagaattt
gatgccatacggataggtattgcctctccggacaaggtgcgttcctggtcgtttggtgaa
gtaaaaaagcctgagaccattaactaccggactttcaagcctgagcgcgaaggtttgttc
tgtgccaagattttcggcccgatcaaggactacgaatgtctttgtggcaagtacaagcgt
ctcaagcatcgtggtgtggtttgcgaaaaatgtggtgtggaagtcacccaggcgcgcgtg
cggcgtgagcgtatgggccacattgagctcgccagcccggtagcgcatatctggttcctc
aagtccttgcccagtcgtatgggtatgattctggatatgccattacgggatatcgagcgc
gttctgtattttgaggcttatgtggtggtagaccccggtgtgaccgcgctggaacgtggt
ctgatcatgagtgaagaccagtatctggatgcgctcgaagaacatggtgacgaatttgtc
gccaagatgggtgcagaaggtattcgcgatctgctgcgcggcattccactggttcaggaa
attgaacgtatccgtaacgaactgcgtgaaagtaactcggacaccaaaaccaaaaaactg
agcaagcgtctgaaaattcttgaaggttttgaatcctcgggaaatcgcccggaatggatg
atcctggaagttttgccggtactgccacccgatctgcgtcctctggtgcctttggatggc
ggtcgttttgcgacttcggatctcaacgatttatatcgtcgcgttattaaccgcaacaac
cgtctgaagcgcctgttggaattgaaagcgccggatattatcgtgcgcaacgaaaaacgc
atgttgcaggaagcggttgatgcccttctggataatggtcgtcgtggtcgcgccatttcc
ggccccaacaagcgtccgctcaagtccttggcagatatgatcaagggtaagcaggggcgt
ttccgccagaacctgctgggtaagcgggtcgattactccggccgttcggtcattgtggtt
ggtcccgagttgcgtctgcatcagtgcggccttcccaagaaaatggcgctggagttgttc
aaaccctttattttcaacaagctggaagagcgcggtttggcgacgactatcaaggcggcc
aaacgcttggtagagcaggaaaaacccgaggtttgggatattctcgaagaagtcattcgc
gaacatccggtcatgctgaaccgcgccccgaccctgcaccgtctgggcatccaggcattt
gaaccggtgttgatcgagggcaaggccattcagttgcatccgctggtttgtgcggcctac
aacgccgactttgacggtgaccagatggcggtccatgtaccgctgtctttggaggcgcag
ctcgaagcccggacattaatgatgtccaccaataacattctcagtcctgccaatggtgat
ccggtcatcgtgccgtcacaggatattgtgctgggactttactatgccagtcaggagcgt
gctgatgccaagggtaccggaggcatgttctccgatattcgcgaagtacgtagggcttat
gaaactggtcaggtgggactccatgcccgcatcacggtccgtttccggggcgagcgcatt
gaaactaccgccggacgcgccctgctcggcgatattttgcccgaagggctatccttcagt
gtcatcaaccgggtgctgaagaaaaaagtcattggcgaactgatcaatacgtgttaccgc
accctgggaatcaaggacaccgtcatttttgcggaccagctgatgtacaccggcttccgt
atggcgacccgcgcgggcatttctttcggtgccggcgatatggtgaccccgcaggagaag
gaaggaattctcagccgctccgaagacgaggtgaaagccatccaggcccaatatacgtct
ggcctggtcaccgagggtgaacgttacaataaagtcgtcgatatctggtcaagagccacc
gatgaagtggcgaaagccatgatggatcgggtcagcaaggaaaccgttgaacttccagac
ggcagcaaggtgcaacaggattcgtttaattccatcttcatgatggcggattccggagcg
cgtggttctgcggcccagattcgtcagttggccggaatgcgcggcctgatggccaagccg
gatggctccatcattgaaacgcccatcaccgccaacttccgtgaaggactcaacgttctc
cagtacttcatctcgacccatggcgcacgtaagggactggcggatacggcgctgaaaacc
gcaaactccggttacctgacccgcagattggtggacgtaacccaggatctggtggtggtt
gaacgcgattgtggatcggaagaaggtctgcccatgacctcgctggtggaaggtggcgaa
gtcatcgaacccttgcgcgaccgggtgctcggtcgggtgctttccgaagatcttctgcat
ccgaataccggggagattgtcatcccccgcaataccatgttggcggagcagcatttgggc
cagcttgacgcactgggtgtggatgcattgaaggtacgatcaccgctcacctgtcattca
cggcacggggtttgtgccctgtgttatggacgtgatctggcccgaggtcatctggtgaac
gcaggcgaagcagttggcgtcatcgctgcgcaatccattggcgaaccgggtacccagttg
accatgcgaactttccatattggtggtgccgccagtcgttctgctgcgcaaagcagtctg
gatgtgaagcagggtggcgtattccattatcagtcgaacttgcgcattgtaacgcactcc
agtggtcgtcacgtcgttgtcggtcgtaacggtgaagtgaccgtgacagacgaacagggt
cgtgaaaaagaacgttacaaaatgccttacggcgcgacattactcgtcaatgataatact
ccggtgacggctggtatgcgggttgctgaatgggatccgcatacgcgtccgattgtcagc
gaggtaggcggtagaatatcactgaaagatgctgtagaaggtgccagtgtcgctattcag
accgatgaaataaccggtctgtcgaccttgatggtcattgatacgaaacagcgtccaccg
cagggtcgggatttgcgaccggtcattggcatccttgatgaaaagggccaagacctcaaa
ttgccgggaaccgacttgccggcacgttatttcctgcccgccagagcgattattgcggta
caggaagggatggagatattcccgggcgacattttggcccgtctgcccgccggtaccacg
aaaacccgtgatattaccggtggtttgccacgtgtggccgagttgtttgaagcccgtcgt
cccaaggactttgcgattattgcggagcacgaaggcattgtcggttttggcaaggatacc
aagggtaagcagcgcctcatcattaccgacgaaaacgctgaacagcatgaatatctcatt
cccaagggccgtcacgttacggtgtacgaaggggagcgtgttgttcccggtgagcaattg
gtagaaggtcagccagtaccccatgacatcttgcgggtgttgggtgtccaggcgcttgcc
aattacattgtcgacgaagtgcaggacgtctatcgcttacagggtgtgcgtattaacgac
aaacacattgaagtgattctgcgccagatgctgcggcgggtagaggtgacttccagtggg
gacggaacctttattacaggcgaccaggtggatcgggcccgggttgaagatgaaaatgcc
cagttggagcgggatggcaaggaaccggcgcgctttaagccgatgctgctcggtattacc
aaggccagtttgtccaccgagtcctttatttcagcggccagtttccaggaaaccacgcgt
gtactaaccgaagcagcggtgtcaggaaagctggatgacctgcgtggcctcaaggaaaac
gtcattgtcggtcgtctggttcccgccggcaccgggcttgcctaccatgaacatcgccgc
cgtctgaatcgtggcgaagtgttggcgactgctggggaatcatcgtctaatgctgcagaa
gccttgctgaacagcgaaaatcggtaa
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