Acidithiobacillus thiooxidans: GCD22_00452
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Entry
GCD22_00452 CDS
T06281
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atx
Acidithiobacillus thiooxidans
Pathway
atx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCD22_00452 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atx03400
]
GCD22_00452 (mfd)
Enzymes [BR:
atx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCD22_00452 (mfd)
DNA repair and recombination proteins [BR:
atx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GCD22_00452 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFX94973
UniProt:
A0A5P9XNP0
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Position
complement(407331..410780)
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AA seq
1149 aa
AA seq
DB search
MDFPLALGPAPRAGNARSFSHVFGAADCWLAAEMLRKWKKPLLVLLPNPRDLEEWQREWS
FFAPDLDAPLIFPDREILPYDRLAPPADATATRLATLAALPNWRGLCLVPLAAALQRLPP
RSFLDQHAFVLAVGDNLQPERFRQRLIDAGYRNVSEVSEPGELAWRGGIIDLFPSGSPLP
YRIELFDTQVESIRAFDPETQRTLEKVSRVSLLPAREIPVDAAALNEFRSQFRAKFSGDP
QRAEVYRAASRGQVPQGAEHYLPLFFPESSHLLNHFPPDGIIFMPPGLESASQQIRQDWQ
ERHEERAYDTSYPILPPDALILTPSEWETALQSRAQVHGEAEGPGESLPCGPLPALQGNS
ETPLSALETFLRHLPQQGRALIAAESPGRQEALSERLNKAGLSATRLKNWPDFLQSTEKI
AITVAPLERGLLLKEKNLVQLALISEAQIFGDRVFAQRRSAQVRQRHVEGMVRDLGELQP
GDAVTHEEYGIGRFQGMSTPFAAQGDVNEYVVLEYAQGDLVYVPADHLDRIARYVGNGAA
EPVLSRLGSQHWDKAKARAREKAIDAASELLDIYARRAARQGRAFAPPDEAYWDFISRFP
FEETPDQQQAIDAVIADMISPHPMDRLVCGDVGFGKTEVALRAAFLAAHGGAQVVVLVPT
TLLAQQHYENFQNRFAGIPLRIEVLSRFQKGKTHKEILAATQAGDVRILIGTHRLLQKDV
VFKDLGLLILDEEHRFGVRQKEQIKALRAEVDILTLTATPIPRTLNLSLAGLRDLSIIAT
PPQRRQPVRTFVQIWEDAVVVEACQRELHRGGQIYFLHNEVRDIERMASNLKRLLPEARL
RVAHGQMPEGELEAVMLDFYHQRFDILLSTTIIESGIDNPHANTILINRADKFGLAQLHQ
LRGRVGRSHQRAYAYLFTPDPRAMSDDARRRLDAIQSLEDLGVGFALASHDLEIRGAGEL
LGEEQSGHMDEVGFTLFMEWLNDAVAAIRAGKDPRSLAEQRASGPEIHLNTAALIPDDYL
PDVHLRLQLYKRLSDVRSDSAIGEIMVEMIDRFGPLPDPTRTLLCQTQLRLLASQIGIDQ
IDAGPSGARLQFAQENQVSPEKIIALIQRPHSVYQLDGGQRLRIRQDLPDGEARCQKIIQ
LIEPLRSNA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttggactttcctctcgctttgggccctgccccccgtgcaggtaatgcacgcagtttcagc
catgttttcggagccgcagattgctggctggcagccgaaatgctccgcaaatggaaaaaa
cctctgttggtgctcctgcccaatccccgtgatctggaagaatggcagcgcgagtggtca
ttttttgcgccggatctggatgcgcccctgattttcccggatcgggaaattttgccctat
gatcgtctggcacctccggctgatgcgaccgccacccgtctcgcgacattggcggcctta
cccaattggcgtgggctgtgtctggtccctctggcggccgctctacaacgtcttccgccc
aggagttttcttgatcaacatgcctttgtactggcggtgggagacaacctccagcccgag
cgctttcgacaacgcctgattgatgcgggctaccgcaatgtcagcgaagtttccgaaccc
ggagagctcgcctggcgcggcggcattattgacctgtttcccagtggtagcccgctgccc
taccggattgagttatttgacacccaggtagaaagcatccgggcatttgatccggaaacc
cagcggactctggagaaagtatccagggtatccctgctgcctgcacgcgaaattcctgtg
gatgcggcagcgctgaatgaattccgcagccagtttcgggccaaattcagtggtgacccg
caacgtgctgaagtctatcgagcggcaagtcgcggacaggttccccagggagcagagcat
tacctgcctctgtttttcccggaaagcagccatctgcttaaccattttcctccggacggg
atcattttcatgccccccggcctggaaagcgccagccagcagattcgccaggactggcag
gaacgccatgaagagcgggcatacgacaccagttatccgattttgccaccagacgcactt
attttgacgccttccgaatgggaaacagcactccagagtcgtgcccaggtgcatggcgaa
gcggaaggccccggtgaaagcctaccctgcggaccgctaccagccctgcagggaaacagc
gaaacgcccctgtccgcactggaaacttttctgcgtcacctcccccagcagggccgcgcc
ctgattgctgcagaatctccgggccgtcaggaagcgctgtctgagcgcctgaacaaagcg
ggtttaagtgccacccgcctgaaaaactggccggattttctccagtccacagaaaaaatc
gctattaccgtagcccccttggagcgcggtctgctgctgaaagagaaaaatctggtccag
cttgcactcatctcggaagcgcagattttcggtgaccgggtatttgcgcaaagacgaagt
gcgcaggtccgccaacgtcatgtggaaggcatggttcgcgatctgggcgaactgcagccc
ggcgatgcggtcacccacgaggaatatggcattggtcgttttcaggggatgagtacccct
tttgcggcgcaaggcgatgtcaacgaatatgtggtgctggaatatgcccagggagatttg
gtgtatgtcccggcagatcatctggatcgcattgcccgttatgtgggcaatggagcagca
gaaccggtgctatctcgcctcggcagtcaacactgggataaagccaaagccagggcccgg
gagaaagccattgatgccgccagtgaactgctggacatatacgcgcggcgggcagctcgc
cagggccgtgcttttgcgccaccggatgaagcctattgggattttatttcccgctttcct
tttgaagaaacgcccgatcaacaacaagccattgacgccgtgattgccgacatgatcagc
ccgcatcccatggatcgactggtttgtggtgatgtagggttcggcaaaaccgaagtggcg
ttgcgggcagcctttctggccgcccatggcggggcacaggtcgtggttctggtacctacc
actttgctggctcagcagcactatgaaaactttcaaaaccgctttgccgggataccgctg
cggattgaggtcctgtcccgttttcagaagggcaaaacccacaaggaaatcctggctgcc
acccaggccggagacgtccggattctgatcggaacccatcgcctgctccagaaagatgtg
gtttttaaagatctcggcctgttgattctggacgaggagcaccgctttggtgtgcggcaa
aaggagcagatcaaggccctgcgtgccgaagtggatattctcaccctgacggccacgcct
attccccgcaccctgaatctgtccctggccggactgcgggatttatccatcatcgccacc
ccaccccagcgtcggcaaccagtgcgtacttttgtgcagatctgggaagacgctgtggtc
gtcgaggcctgtcagcgcgaattacatcggggcggacaaatttattttctgcacaatgaa
gtacgggatatcgaacgcatggccagcaacctcaagcgtctgcttcccgaagcccggctc
cgggtcgcccacgggcaaatgcctgaaggcgagctggaggcggtcatgctagatttttat
catcaacgcttcgatattctgctcagcaccacgattatcgaatccggcatcgacaatcct
cacgccaataccatactcatcaatcgcgctgataaatttggcctcgcgcaactccaccag
ctccggggccgggtggggcgctcccatcaacgggcttatgcgtatttgtttaccccggac
cctcgcgccatgagtgatgatgcccggcgccgcctggatgccattcagtccctggaagat
ctgggcgtcggctttgccctggccagtcatgatctggaaattcgtggagccggagaactc
ctgggcgaagaacaaagcgggcacatggatgaagtgggtttcacgctctttatggaatgg
ctcaacgacgccgttgccgccatccgtgcgggcaaggacccccgcagcctggccgaacaa
cgcgccagcggaccggaaattcatctgaatacggcggcactgattcccgacgattatctg
cccgacgtgcacttgcgtttgcaactatacaagcgcctcagcgatgtccgcagtgattcc
gccattggtgaaatcatggtggaaatgatcgaccgattcgggccattgccagacccgacc
agaaccttgctgtgccagacccagctccgcctcctggccagccaaatcggcattgatcag
attgatgccggaccttcgggagcgcgcctgcaattcgcccaggaaaatcaggtatccccg
gaaaaaatcattgcgcttattcagcgtccgcacagtgtctatcagctggatggcggccaa
cgcctcagaattcgccaggatttacccgacggcgaggcacgctgccaaaaaatcattcaa
ctcattgaaccattaaggagtaatgcatga
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