Acidithiobacillus thiooxidans: GCD22_00753
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Entry
GCD22_00753 CDS
T06281
Symbol
deaD
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
atx
Acidithiobacillus thiooxidans
Pathway
atx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCD22_00753 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atx03019
]
GCD22_00753 (deaD)
03009 Ribosome biogenesis [BR:
atx03009
]
GCD22_00753 (deaD)
Enzymes [BR:
atx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCD22_00753 (deaD)
Messenger RNA biogenesis [BR:
atx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCD22_00753 (deaD)
Ribosome biogenesis [BR:
atx03009
]
Prokaryotic type
rRNA helicases
GCD22_00753 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
QFX95216
UniProt:
A0A5P9XPY8
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All DBs
Position
684417..686285
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AA seq
622 aa
AA seq
DB search
MSQQSDLRFSDFALAEPLQKAVAEIGYEQPSPIQEQSIPPLLEGRDVIGLAQTGTGKTAA
FALPLLSRVDISLRIPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMGLQL
KQLQRGVHVVVGTPGRIQDHLRRKTLRLDQLQAVVLDEADEMLRMGFIDAVEDILQHTPD
GRQVALFSATMPDAIRRIAKTYLKDPLEIKIKSATTTVATIRQRYWQVSGTHKLDALTRI
LEVEDSNAWIVFVRTKTATVELAERLEARGYACGALNGDLSQALREQTIERLKSGALDIV
IATDVAARGLDVERITHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLRA
IEKATGQTITAMHLPSIEDVADRRMTQFKDQLSEVINAQDLSVFESLIADYQQEHDVGLS
EIAAALAYMVQKERPLVPVEEPTRPMRTESSGSGRPSPSRRRGDDERPVRSDRGANRTPR
KPLADDQPMRRFRLDVGEDHGAQIKNIVGAIANEAGIPSRNIRKVEIHGEYSTVELPADL
PAAALQHLQKVWVAGRPLQIAPQEAGGDKSGAPRRSSAPRARTGGDAKPSRKILSATTKP
SKGEGKPRGNSAGKRKKPTRES
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaacaatctgatctccgttttagtgattttgctctcgccgaacctttgcagaag
gcggtggcggagatcggctatgaacagccttccccgattcaggagcaaagtatcccgccg
ctgctggaaggccgtgatgtcattggcctcgcccagacaggtacgggtaagacggcggct
tttgccttgccactgctcagtcgcgtcgacatcagcctgcgcattccgcaattgctcgtt
ctggctcccactcgcgaattggccatccaggttgccgaggccatgcaaagctacgccaaa
tttctgccgggttttcatgtattgcctatttacggtggacaatccatgggcttgcaactg
aagcaactgcagcggggggtacatgtagtggtagggactccggggcgtattcaggatcat
ttgcgccgcaaaaccctgcgccttgaccaattacaggcggtagttctggatgaggccgac
gaaatgctgcgcatgggcttcattgatgcagtggaagacatcctgcagcacacgccggat
ggtcggcaggtggccttgttctcggcgaccatgcccgatgccattcgccggattgcgaaa
acctatctcaaggaccctcttgaaatcaaaatcaagtcggcgacgaccaccgtagccact
attcgtcagcgttactggcaagtgagtggtacccacaagctggatgcgctgacgcggatt
ctggaagtcgaagacagtaatgcctggattgtatttgtccgcaccaaaactgcgactgta
gaactcgccgagcgtctggaagcacgcggttatgcctgcggtgccctgaatggtgatctg
agtcaggccctgcgtgaacaaaccatcgaacgcttgaaatccggtgcgctggacattgtg
attgctacggatgtcgcggcgcggggcctggatgtggaacgcatcacccacgtcattaat
tacgatattcccaatgataccgaggcttatgtgcatcggattgggcgtaccggacgggca
ggacgaaccggtgatgccatcctctttgtggcgccgcgcgagcgtcatttgttgcgggct
attgaaaaggctaccggccagacgattacggctatgcatctgccgagcatcgaagatgtg
gccgaccgccgcatgacccagttcaaggaccaattgtcggaagtgatcaatgctcaggat
ttgtcggtttttgaatcgctcattgccgattatcagcaggaacatgacgtgggcctcagt
gaaattgcggcagctctggcctacatggtgcaaaaagaacggccactggtgcctgttgaa
gaacccacccggcccatgcgtactgagtcctcaggatcggggcggccaagtccttcacgg
cggcgcggcgatgacgaaaggccagtgcgcagtgatcgcggtgctaaccgcacaccccgt
aaaccccttgctgatgatcagccgatgcggcgcttccgtctggatgtcggcgaagatcac
ggcgcccagatcaaaaatattgtcggcgctattgccaatgaggcagggattcccagtcgc
aatatccgcaaggtggaaatccacggcgagtacagtacggtagagttaccggcggatctt
cctgcggccgccttgcagcatttgcagaaagtctgggtggcgggacggccgttacaaatt
gccccacaagaagctggaggcgataaatcgggagcaccccgtcggtcttcagcaccacgt
gcgcgtaccgggggagacgcgaaaccatccagaaagattttgtcggcaactaccaagcca
tcgaaaggtgagggtaaaccgcgtggtaactcggctggcaagcgcaaaaagccaacgaga
gagagttag
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