Acidithiobacillus thiooxidans: GCD22_02899
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Entry
GCD22_02899 CDS
T06281
Symbol
alkA
Name
(GenBank) base excision DNA repair protein
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
atx
Acidithiobacillus thiooxidans
Pathway
atx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
atx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GCD22_02899 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atx03400
]
GCD22_02899 (alkA)
Enzymes [BR:
atx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
GCD22_02899 (alkA)
DNA repair and recombination proteins [BR:
atx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GCD22_02899 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
AlkA_N
Motif
Other DBs
NCBI-ProteinID:
QFX97036
UniProt:
A0A5P9XUZ6
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All DBs
Position
2572861..2573787
Genome browser
AA seq
308 aa
AA seq
DB search
MNQAASRFTLSPPAPFRLDLTVWALRRQAHNQIDSWDGEIYRRAWQYSGNRLEVRLWQTQ
AGRTPLLEGEVQGNCVDASSVAWVSRQLSWMLSLDQDLRPFYAMAASDLRLAALADRFQG
FRPPRFSSLFEALSNAIACQQLSLHVGILLLNRMARLCSNAPEATNSFVPFPNPATLLQL
EAASLRSLGFSIQKAKFLHGIAETAAAGQLARENWQGLSNSEAAQRLHQLRGIGRWSTEY
VLLRGLGRLDVFPGDDVGARKALYQWLEEKSAPDYTQVAKRLQPWQPYAGMLYFLLLLNR
LEKEGHIP
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaggccgcaagccgttttacgctcagcccgcccgcgccctttcgcctggacctg
accgtctgggcactccgtcgtcaggctcataatcagatagatagctgggatggcgaaatc
taccggcgggcctggcaatattcaggaaacaggctggaggtccggctttggcaaactcag
gctggcaggacgccactgctggaaggagaagtccaggggaactgcgttgatgcatcaagc
gttgcctgggtcagcaggcaactttcgtggatgctgagtctggaccaggatcttcgcccc
ttctacgcgatggccgccagcgacttgcggctggcagctctggcggatcgctttcaagga
ttcaggccgccgcgtttttcctctcttttcgaagcgctgagtaatgccattgcctgccag
caattaagtctgcacgtcggcattctcctgctcaatcgcatggcgaggctgtgcagtaac
gctcccgaagcaacgaactcgtttgtgcctttcccgaaccctgccaccttactgcagctg
gaagcagccagcctgcgcagcctggggttcagcatccagaaggccaagtttttgcatgga
attgcagaaaccgctgcagcaggtcagttggcgcgtgaaaactggcaaggcctgagcaat
tctgaagccgcacagcgcctgcatcagttgcgcggtatcggccgttggtctacagaatat
gtgttactgcgcgggctggggcgtctggacgtgtttcccggtgatgatgtaggtgcccgc
aaggccttgtatcagtggctggaagaaaagtctgctccggactatacgcaggtagccaaa
aggttgcagccttggcaaccctatgctggcatgctgtattttcttctgctcttaaaccgc
ctggagaaggagggacatataccatga
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