Acidiferrobacter thiooxydans: A9R16_000365
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Entry
A9R16_000365 CDS
T07877
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
aty
Acidiferrobacter thiooxydans
Pathway
aty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9R16_000365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aty03019
]
A9R16_000365
Enzymes [BR:
aty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A9R16_000365
Messenger RNA biogenesis [BR:
aty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A9R16_000365
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UEN99883
LinkDB
All DBs
Position
75344..76792
Genome browser
AA seq
482 aa
AA seq
DB search
MNDTHLTQQAFSGLGLPEPLLAGVLSAGFTHCTPIQAATLPKALAGHDVAGQAQTGTGKT
AAFLLAVFNRLLMVPSPADRRPNQPRALILAPTRELAIQIHKDALVLGAGCAQSIQLAYG
GTGYESQRKAIEEGVDILIGTPGRLIDYFKQHVFDLRALEVMVLDEADRMFDLGFIKDIR
YLLHRMPPVDKRLSLLFSATLSYRVMELAYEHMNNPELVRIEAEKMTAERVRERLYHVAQ
EEKLPVLVGLLRREQVSRGLVFTNTKHAAERVQGWLEANDFAAAVLSGDVPQQKRQSLLA
DFQGGHFPILVATDVAARGLHIPDVSHVFNYDLPQDAEDYVHRIGRTARAGAAGEAVSLA
CDEYAFSLMDIEAYIGHKIPVARVTDDLIVSLRRPAHKAPREHVGHHARTRGESTARDRG
HRHSSRRPHEEARGPRRPAPAASPAHTASLAPKPAPSRPAEPRPAEPVRPHGRKAPEKPV
LG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatactcaccttacccagcaagcgttttcgggcctcgggttgccggaaccactc
ctcgccggagtcctcagcgccggtttcacccactgtacacccatccaggcggccaccttg
cccaaggcgctcgccggccacgacgtggccgggcaggcccagaccggcaccggcaagacc
gcggcctttcttctggcggtcttcaaccgcctgctgatggtgccctcgcccgcggatcga
cggccgaaccagccgcgtgccctgatccttgcgcccacgcgcgagttggccatccagatc
cacaaggacgccctggtgttgggtgcggggtgcgcgcagagtatccagctcgcctatggc
gggaccggttacgagagtcagcgcaaggccatcgaggagggtgtcgatatcctcatcggc
accccgggacgcctcatcgactatttcaagcagcacgtcttcgatttgcgcgcgctggag
gtgatggtcctggatgaggccgaccgcatgttcgatctcggctttatcaaagacatccgc
tacctgctgcatcgcatgccgccggtcgacaagcgtttgagcctgctgttttcggcgacg
ctgtcctatcgcgtcatggaactggcctacgagcacatgaataaccccgagcttgtacgc
atcgaggcggaaaagatgaccgccgagcgggtgcgcgagcgactctatcatgtggcccag
gaggaaaagctgccggtgctggtcgggcttttgcgccgtgagcaggtatcgcgggggctg
gtgttcaccaacaccaagcatgccgcggagcgcgtgcaggggtggctcgaggccaatgat
ttcgcggccgcggtgctttccggggacgtcccgcagcaaaagcgtcagagcctgctcgcg
gatttccagggggggcattttccgatactggtcgctaccgacgtggcggcgcgtggtctg
cacataccggacgtgagccacgtcttcaattacgacctcccgcaggacgccgaagattat
gtgcatcgcatagggcgaacggcgcgcgccggggccgccggcgaggcggtgagcctggcg
tgcgacgagtacgccttttcgctcatggatatcgaggcctacatcggccacaagatcccg
gtggcgcgcgtcacggacgacctgatcgtgtccttgaggcgcccggcgcacaaggccccg
cgcgaacatgtcggccaccatgcgcgcacgcgtggcgagtccactgcgcgtgatcgcggc
caccgccattcatccaggcggccgcacgaggaggcgcgcggcccgcgacgccccgcgccc
gcggcctctcccgcgcacacggcctctttggcccccaagccggccccttcccggcctgcc
gaaccccggcccgcggagccggtgcggccgcacggccgcaaggcccccgagaaaccggtc
ctcggttag
DBGET
integrated database retrieval system
