Acidiferrobacter thiooxydans: A9R16_007840
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Entry
A9R16_007840 CDS
T07877
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
aty
Acidiferrobacter thiooxydans
Pathway
aty03420
Nucleotide excision repair
aty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A9R16_007840
03430 Mismatch repair
A9R16_007840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aty03400
]
A9R16_007840
Enzymes [BR:
aty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A9R16_007840
DNA repair and recombination proteins [BR:
aty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A9R16_007840
MMR (mismatch excision repair)
Other MMR factors
A9R16_007840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
AAA_19
UvrD_C
UvrD_C_2
AAA_30
Cas_Cas4
AAA_12
AAA_11
ResIII
YnfE
Motif
Other DBs
NCBI-ProteinID:
UEO01299
LinkDB
All DBs
Position
complement(1629673..1632594)
Genome browser
AA seq
973 aa
AA seq
DB search
MTNNTAALQTKANPQQLEAILATDGPVLIIAGPGSGKTFTLVERIVYLITQKDIAPESLF
VVTFTDKAARELTTRISNRLVELSIKFNLNDMYLGTFHSICLRLLEDFREFTRLKRSFTL
FDQFDQQYFLYQHIKDFRELPDAKLVIGNDQSGRWAQSESLLKWLNKVAEEALDLPTLEA
APDIEVRVLATCFRKYQELLHEHNSLDFSGIQYEALQLLEKRPEVLAHLREKFSYLMVDE
YQDTNTIQERILLLLAGERCNLCVVGDDDQGLYRFRGATIRNILEFPALFDEGQCKRATL
TVNYRSHPDIIRFYNEWMREQTWDDGTRVFRFAKQIVPREDDFPDMPTAVRLAASDGKGE
TTNWHAEVLAFLNGLKASGKLSDWNQVAFLFRSVKNDKVVALARFLESEGVPVFSPRSNM
FFEREEIRLMIGALIFLFPQFPKVRAWTEGVHLDIWDYYDQLCFKPFTDELRKPENKSLL
DWARPLAKHHAVLTQNTDYAFSGLFYQLLQFPLFSCFLSEEAVQGVDKGRAARNLGTFSK
LLTKFEYLHFVSVLNPEWLEKNIRDLFNQFLRFLVDGGIGEYEDESEYAPKGCVSFLTIH
QSKGLEFPVVVCGSLEAVPRKQHTALDELLEDAGYLSKPRFEPRNHIKNFDFWRLFYTAF
SRAQNLLVLAAQERQGRGLGKSPSRYFEHLFYELPSWRTVDLSALTFEAVKQINLKREYS
FTSHINVFESCAEQYRFFKELEFNPIRAGAQLFGTLVHQTIEDIHKAVLRGEEATVNPEQ
IQSWMTINYQYLSKRERQYLAPQTLKAVEQHILGYYEREKGNWDRIKEAEVEISLVKDQY
ILKGSVDLIRGEHDTVEVIDFKSEKKPDMEKDRERLRQYQHQLEVYAHLVEERTGQKVGR
MHLYYTGEDGGNPYVSFTKDDRAIGKTIARFDDIVERIERQDYQIVARPAKLCQSCDMRA
YCDNKNWKFRKDP
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacaatactgccgcgctgcaaaccaaggccaacccccaacagctcgaagccatc
ctggccaccgacggcccagtgctgatcatcgccggcccgggctccggcaagaccttcacg
ctggtcgagcgtatcgtctacctcatcacgcagaaggatatcgcgcccgagtcgctcttc
gtcgttaccttcactgacaaggctgcgcgcgaactgaccacccgcatctcgaaccggctg
gtcgagttgagcatcaagttcaacttgaacgacatgtaccttggcaccttccactcgatc
tgcctgcgactgctagaagacttccgggagttcacccggctcaagcgtagcttcacgctc
ttcgaccagttcgaccagcagtatttcctctaccagcacatcaaggacttccgtgaactc
cccgatgccaagctcgtcataggcaacgatcagtcgggccgatgggcacagtcggaaagc
ctgctaaagtggctgaacaaggtcgccgaggaagcgctagacctccccacgctagaggcc
gcccccgatatcgaagtgcgcgttctagccacctgcttccgcaagtaccaggagctgctg
cacgagcacaactccctcgacttctccggcatccagtatgaggcactgcaactgctagag
aagcgtcccgaggtgctggcgcacctgcgcgaaaagttctcgtacctgatggtggacgaa
taccaagacaccaacaccatccaggaacgcatccttctgctgttggctggcgagcgttgc
aatctctgtgtcgtcggtgacgacgaccagggcctgtaccgttttcgcggggcgaccatc
cgcaatatcctagaatttccagcattgttcgacgagggccagtgcaaacgggccacgctc
acggtcaactatcgctcgcaccccgacatcatccgcttctacaatgagtggatgcgcgaa
cagacatgggatgacggcacgcgcgtcttccgcttcgccaagcagatcgtgccacgcgag
gacgacttccccgacatgcccacggcggtgcggctggccgccagtgacggcaagggcgaa
accaccaactggcacgccgaggtgctggccttcctcaacggcctgaaggcgtccggcaag
ctgtcggactggaatcaggtggccttcctgttccgctcggtgaagaacgacaaggtggtg
gcgctggcacgcttcctcgaatccgagggcgtgcccgtgttctcaccccgctcgaacatg
ttcttcgagcgtgaggaaatccgcctgatgatcggcgcgctgatctttctttttccgcag
ttcccgaaggtgcgggcatggacggaaggcgtgcatctggatatctgggactactacgat
cagctttgcttcaagcccttcacggacgaattgcgcaagcccgaaaataagtccctactg
gattgggcgcgcccgctggccaagcaccacgccgtgctcacgcagaacaccgactacgcg
ttctccggcctgttctaccaactgctccaattcccgctgttctcgtgcttcctcagcgaa
gaagcggtgcaaggcgtggacaaagggcgcgcggcacgtaaccttggcaccttctccaag
ttgctcaccaaattcgagtacctgcacttcgtcagcgtgcttaacccggaatggctagag
aagaacatacgcgatctgttcaaccagttcctgcgcttcctagtggacggcggcatcggc
gagtacgaggacgaatccgagtacgcaccgaagggctgcgtctcattcctgaccattcat
caatcgaagggccttgagtttcctgtggtcgtctgtggctcgctagaggccgtcccaagg
aagcagcacacggcgctagacgagctcctggaggatgccggctacctttccaagccgcgc
ttcgagccgcgtaaccatatcaagaacttcgatttctggcggctgttctatacggccttc
tcgcgcgcgcagaacttgcttgttctggccgcgcaggagaggcaaggccgaggcctgggc
aagtcgccgtccaggtatttcgagcatctgttttacgagctgccgagctggcgcaccgtt
gacctttcggccctcacttttgaggcagtaaagcagatcaacctcaagcgcgaatactcg
ttcacatctcatatcaacgtgttcgagagctgcgccgaacagtaccgcttcttcaaggaa
ctggagttcaaccccatccgtgccggtgcccagctatttggtaccttggtgcatcagacc
attgaggacatccacaaggctgtattgcgaggggaagaagcaacggtcaacccagagcag
attcaatcctggatgacgattaattaccagtacctgtccaaacgcgagcgccagtacctc
gcaccacaaaccctgaaagcagtagaacagcacatcttgggctactacgaacgggaaaag
ggcaattgggatcgtatcaaggaggctgaggtagagatttcgctcgtaaaggatcagtac
attttgaagggcagcgttgacctgatacgaggcgagcacgacacagtcgaggtcattgac
ttcaagtcggagaagaagcccgatatggaaaaggatcgggaacgcctgcgccagtaccaa
caccagctggaggtgtacgcccatctggtggaagagcgcaccggccagaaggttggccgg
atgcacctgtactacaccggtgaggacggcggcaacccatacgtctccttcacgaaggac
gaccgcgccatcggcaagaccatcgcgcgcttcgacgacatcgtcgagcgcatcgagcgg
caggactatcagatcgtagcacggccggccaagctctgccaaagctgtgacatgcgcgcc
tactgcgacaacaagaactggaaattcaggaaggacccatga
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