Acidiferrobacter thiooxydans: A9R16_008425
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Entry
A9R16_008425 CDS
T07877
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aty
Acidiferrobacter thiooxydans
Pathway
aty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9R16_008425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aty03019
]
A9R16_008425
03009 Ribosome biogenesis [BR:
aty03009
]
A9R16_008425
Enzymes [BR:
aty01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A9R16_008425
Messenger RNA biogenesis [BR:
aty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9R16_008425
Ribosome biogenesis [BR:
aty03009
]
Prokaryotic type
rRNA processing factors
A9R16_008425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Anti-TRAP
DUF5351
Motif
Other DBs
NCBI-ProteinID:
UEN98472
LinkDB
All DBs
Position
complement(1742976..1745195)
Genome browser
AA seq
739 aa
AA seq
DB search
MKRMLFNATHSEELRVAIVDGQKLIDLDIESANYQQKKGNIYKARVTRVEPSLEAAFVDY
GAERQGFLPLKEISRSYFNGAENKGTQGPVRIKDVIREGQEIVVQIEKEERGNKGAALTS
FISLAGRYLVLMPNNPKGGGISRRIEGEERAELRDTMAQLRLPDDYSVIIRTAGIGKSVE
ELQWDLDYLVQLWDAITRASEDQPAAFLIYQESSLVIRAIRDYLRSDIGEILIDNQDIYE
RALKFMQQVMPQNVGKLKLYEDEIPLFSRYQIEHQIESAFSREVHLESGGAVVFDHTEAL
VTIDVNSARATRGSDIEETALNTNLEAAEEIARQLRIRDLGGLIVIDFIDMTPTRNQRAV
ETRLSEALKADRARVQVGRISRFGLLEMSRQRLRPSLGESNSLTCPRCEGTGHIRSVPSS
ALQILRFIQEEAMKENTAALHVHLPLATATFLLNEKRHEISGIESRLGTPITIVPSIDLE
TPHYRIKRLKAEEIEAERIAPSYLIPLEVEPEEPSRPSNPIMERPAVGQLAPIAPPRPEA
ANPPPPAPANGLIRSFLHRLLGGSNTPAPTQAPAAAESAPTAPTARPARPPRRAATGRNR
PPAKAPAETRERPREVAPEKGERSERAGDRPADKGDRPARPRGHRARRGGRGRHGSERGD
TTAASPESASGNQMTATADTPAPSGEPMRDTAPVQDRGAYPLPATPEPAVHQEPAVRRPE
EPEARPVRETERQEAPSDE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctttttaatgccacccactcggaagaactgcgagtggcgatcgtcgac
ggccagaaattgatcgacctggacatcgaatcggccaactatcaacaaaagaaaggcaat
atctacaaggcgcgtgtgacacgcgtggaacctagtctcgaggcggcattcgtcgactat
ggagccgaacggcagggcttcctgcccctaaaggagatctcgcgcagctatttcaacggg
gccgagaacaagggcacgcagggtccggtacgcatcaaggacgtcatccgcgaaggccag
gagatcgtcgtccagatcgagaaggaggagcgcggcaacaagggcgcggccctcacctca
ttcatcagcctcgccggtcgctatctggtcctgatgccgaacaatcccaagggcggcggt
atctcgcgtcgcatcgagggggaggagcgggccgaactgcgcgacaccatggcccagctg
aggctgccggacgactactccgtaatcatccgcacggcgggcatcggcaagagcgtcgaa
gagctccagtgggacctcgattatctggtgcagttgtgggatgccatcacgcgcgcgagc
gaagaccagccggcggcgttcctgatctatcaggaaagcagcctcgtcattcgcgcaatc
cgcgattatctgcgcagcgacatcggcgaaatcctgatcgacaaccaggatatctacgaa
cgcgccctgaaattcatgcagcaggtcatgccgcagaacgtcggcaagctcaagctctac
gaagatgagatcccgctgttttctcgttaccagatcgaacatcagatcgagtcggcattt
tcccgcgaggtccatctggaatccggcggcgcggtggtattcgaccacaccgaggcgcta
gtcacgatcgacgtcaactcggcgcgcgctacgcgcgggagcgacatcgaggaaaccgcg
ctcaataccaacctcgaggccgccgaagagattgcccggcagctgcgtatccgtgatctt
gggggcttgatcgtcatcgatttcatcgatatgacgccgacgcgcaaccagcgtgccgtg
gaaactcgcctgagcgaggcgctcaaggccgaccgcgcgcgcgtacaagtcggacggatc
tcccgtttcgggctcctcgagatgtcgcgccaacggttgcggccgtcgctcggcgagtcc
aacagcctgacttgtccgcgctgcgagggtaccggtcatatccggagcgtgccctcatcc
gcactgcagatcctacgcttcatccaggaagaggcaatgaaggagaatacagcggcactg
catgtgcacctgccgctcgccaccgcaacctttctcctgaacgagaaacgccatgagatc
agcggcatcgaatcgcgtctgggtacgcctatcacgattgttccgagcatcgatctcgaa
accccgcactaccgaatcaaacgtctgaaggccgaggagatcgaggccgagcgtatcgcg
ccaagctatttgatcccgctcgaggtcgagcccgaagaaccctcgcgcccctcgaacccg
atcatggagcggccggccgtgggccaactggcgccgattgcgccgccccgaccggaggct
gcgaacccgccgccccccgcccccgccaacggactgatacgatctttcttgcatcgcctc
ctgggcggcagcaatacgcccgcacccacgcaagccccggccgctgccgagtccgccccg
acggcccccacggcacggcccgcgcgtccgccccggcgcgccgcaaccggccgcaatcgg
ccaccggccaaggcccccgcggaaacacgtgagcggccgcgtgaggtcgcgcccgagaaa
ggggaacgcagtgagcgcgccggagaccgcccagcagataagggagaccgcccagcacgg
cctcgaggtcaccgggctcggcgcggcggccgtggccgccatggcagcgagcgcggggat
accacagcggccagcccggagagcgcgagcggaaaccagatgacggcaacggcagacacc
ccggccccctccggcgagcccatgcgcgacaccgcgccggtccaggatcggggcgcatat
ccgctcccggccacgccggaaccggctgtgcaccaggaaccggctgtgcgacggccggag
gaacccgaggcgcggcccgtgcgcgagaccgaacgacaggaggcaccgagcgacgagtga
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