Acidiferrobacter thiooxydans: A9R16_013350
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Entry
A9R16_013350 CDS
T07877
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
aty
Acidiferrobacter thiooxydans
Pathway
aty02020
Two-component system
aty02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aty00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
A9R16_013350
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A9R16_013350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aty03021
]
A9R16_013350
Transcription machinery [BR:
aty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A9R16_013350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
Motif
Other DBs
NCBI-ProteinID:
UEN99395
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All DBs
Position
2814235..2815668
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AA seq
477 aa
AA seq
DB search
MKQTLDLRIGQHLTITPQLQQAIRLLQLSSIELEQEIREVLEKNPLLEEADHTDGEEAAA
EEPAEAVTADEVRDDGEGDADPAELDWEGDYEPAPSSSGSGDDDNDTNFEARNSRPTSLR
DHLLWQLQMTPFSDRDRLVAIAIIDAIDEDGYFVGGVDDILATLPDLELTTDEVEAVLHQ
VQNFDPVGVAARHLGECLDLQLRRLDPATPYRDAARLLTDPTHLKLLGQRDFKEIKRLTH
LDSETLGPAMALLKGLNPRPGSHVSTAPNAYVVPEILVKKRRGSWRADLNIAAMPRLRIN
SHYERMIQRGRGSAQDRFLHDHLQEARWFLKSLQSRNETLLKVARVIVDRQRGFFDHGPE
AMRPLVLHDVAGEVGMHESTVSRVTTNKYMMTPRGIFELKYFFSSHVGTADGGTCSATAI
RSLIRKIIEAEPPDRPISDSKIADLLLEQGINIARRTIAKYRESLSIPPSSQRKSLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagacactcgacctcagaatcgggcaacacctcaccatcacgccccagctgcag
caggcgatccgtctgctgcaactgtcgtcgatcgagctcgagcaggagatacgcgaggtc
ctggagaaaaacccgctcctggaggaggccgaccataccgacggcgaagaggcggcggcc
gaggaaccggccgaggcggtgaccgccgacgaggtccgggacgatggcgagggcgacgcg
gaccccgcggaactcgactgggagggcgattacgagcctgcgccatcgagttccgggagc
ggcgacgacgacaacgacaccaatttcgaggcgcgcaacagccgcccaacaagcctaagg
gaccacctcctctggcaactgcagatgacgccgttctcggatcgcgatcggctcgtggcc
atcgccatcatcgacgccatcgacgaagacggatatttcgtggggggcgtcgacgatatc
ctggcaaccctcccggacctggaactcaccacagacgaggtcgaggcggtcttgcaccag
gttcaaaacttcgatccggtcggggtcgccgcgcgccacctaggcgaatgcctcgacctg
cagctgcgccgcctggacccggcgaccccctaccgggacgccgcgcgcctcctcacagac
cccacacacctgaaactcctcgggcagcgtgatttcaaggaaatcaagcgcttgacgcac
ctcgactcggagacgctggggcccgccatggctttattgaagggcctgaacccgcggccg
ggatcgcatgtctcgaccgcccccaatgcctatgtcgtgccggagatcctggtaaagaag
cggcgcgggagctggcgcgccgacctcaacatcgccgccatgccgaggctgcgcatcaac
agccactatgagcgcatgatacaacgcgggcgcgggtccgcgcaggatcgcttcctgcac
gatcatctccaggaggcgcggtggttcctaaagagcctgcaaagccgcaacgagaccctg
ctcaaggtggcacgtgtcattgtcgaccgccaacgcggcttctttgatcatgggccggag
gccatgcgccccctggtcttgcacgacgtcgcaggagaagtcggtatgcacgaatccacg
gtctcgcgggtcaccaccaacaaatacatgatgacgccgcgtggcatattcgagctcaaa
tacttcttctcgagccatgtcggcacggccgacggcggcacctgctcggcgaccgccatc
cgctcgcttatccgcaagatcatagaggccgagccgcccgacagacccatcagtgacagc
aagatagccgatttgctcttggaacaaggcatcaatatcgccaggaggaccatcgcgaaa
taccgggagtcactcagtatcccgccgtccagtcaacgaaaatcgctcgtttaa
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