KEGG   Aureimonas sp. AU20: M673_02160
Entry
M673_02160        CDS       T04161                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
aua  Aureimonas sp. AU20
Pathway
aua03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aua00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M673_02160 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aua03021]
    M673_02160 (rho)
   03019 Messenger RNA biogenesis [BR:aua03019]
    M673_02160 (rho)
Transcription machinery [BR:aua03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     M673_02160 (rho)
Messenger RNA biogenesis [BR:aua03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     M673_02160 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 S1CSD-TOTE-2 AAA_25 NACHT Fungal_virus_P2_C AAA DUF6360 Spore_III_AA
Other DBs
NCBI-ProteinID: ALN71497
LinkDB
Position
474843..476108
AA seq 421 aa
MPEIKLQDLKDKTPAELVAFAEENEVESASTLRKQELLFAILKRLAAQEIEIIGEGVVEV
LQDGFGFLRSPDANYLPGPDDIYISPSQLRRFSLKTGDTVEGTIRGPKDGERYFALLKVT
TINFDDPEKIKHKSHFDNLTPLYPNERFKMENPDPTKKDISARVIDLVAPLGKGQRALIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAS
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILSPMGTTDAMEFLIDKLKQTKSNADFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcctgagatcaaactccaggacctcaaagacaagacgcccgccgaactcgtcgccttc
gccgaggagaatgaggtcgaaagcgcgtccacgctgcgcaagcaggaactgctcttcgcc
attctcaagcgcctcgccgcgcaggagatcgagatcatcggcgaaggcgtcgtggaagtg
ctgcaggacggtttcggcttcctgcgctcgcccgacgcgaactacctgcccggcccggac
gacatctacatttccccctcgcagctgcgccgcttctcgctgaagaccggcgacacggtg
gagggcacgatccgcggacccaaggacggcgagcgctatttcgcgctgctcaaggtcacg
acgatcaatttcgacgatcccgaaaagatcaaacacaagagccatttcgacaatctgacg
ccgctctaccccaacgagcggttcaagatggaaaatccagacccgaccaagaaggacatc
tcggcccgggtcatcgatctcgtcgccccgctcggcaagggccagcgcgcgctgatcgtc
gccccgccgcgcacgggtaagaccgttcttctccagaacatcgcccattccatcacggcc
aaccatcccgagtgctacctcatcgtgctgctcatcgacgagcggccggaggaagtcacc
gacatgcagcgctcggtgaagggcgaagtcgtttcctccaccttcgacgagccggcgagc
cgccacgtgcaggtcgccgaaatggtgatcgagaaggccaagcgtctggtcgagcatggc
cgcgacgtggtgatccttctcgactccatcacccgcctcggccgcgcctacaacacggtg
gtcccgtcgtcgggcaaggtgctgacgggcggcgtcgacgccaacgccctgcagcggccc
aagcgcttcttcggcgcggcgcgcaacatcgaggaaggcggctcgctgaccatcatcgcg
acggccctgatcgacacgggctcgcgcatggacgaggtcatcttcgaagagttcaagggc
accggcaactcggaaatcgtgctcgaccgcaaggtggcggacaagcgcatcttcccggcc
atggacattctcaagtccggcacgcgcaaggaagacctcctcgtgccccgccaggacctg
cagaagatcttcgtgcttcgccgcatcctctcgcccatgggcacgacggacgcgatggaa
ttcctcatcgacaagctcaagcagaccaagagcaatgccgacttcttcgagtcgatgaac
acgtaa

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