Aurantimonas sp. HBX-1: LXB15_04415
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Entry
LXB15_04415 CDS
T07802
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aub
Aurantimonas sp. HBX-1
Pathway
aub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXB15_04415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aub03019
]
LXB15_04415
Enzymes [BR:
aub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LXB15_04415
Messenger RNA biogenesis [BR:
aub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LXB15_04415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
UIJ72906
LinkDB
All DBs
Position
complement(946103..947461)
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AA seq
452 aa
AA seq
DB search
MTHTDFQAFGLADTLLSALARLDISQPTPIQAQAIPAVMEGRDVLGIAQTGTGKTAAFAL
PVINAILEKGGRPMPKTPRALILTPTRELASQIAQNVKAYTAGTKVSHHVIFGGVSIRPQ
IDAMRRGVDIVIATPGRLLDLVDQRAISLTDVRHVVLDEADRMLDMGFVRDVMKIVGMLP
KQRQSLLFSATMPRSIADLAAKILTNPVRFEVTPEVVTVEKIQQSVYLVPQKAKKLWLIE
ALSKPEFTKVVIFTRTKHGANKLSEDLGKAGIEAGAIHGNKSQAARQKALATFHSGKTGV
LVATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGKSGAAIALVDPSERSKLR
SIERLTGITFDVVQTDFLGNIDLAAEPTRPARTGRPPNRSGKPQGQRRDGQKPGGQRPAG
ENRNRNADPKGAGRGNRRQGRGGGGRPQAATA
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
ttgacccataccgattttcaggcgttcggcctcgccgacacgcttctctcggcgcttgcg
cgcctcgacatcagccagcccaccccgatccaggcacaggcgattcccgccgtgatggaa
ggccgcgacgttctcggcatcgcccagaccggcaccggcaagaccgcggccttcgcgctg
ccggtgatcaacgccattctcgagaagggtggccggccgatgccgaaaaccccgcgggcg
ctgatcctcacccccacccgcgagctcgcctcgcagatcgcccagaacgtgaaggcctat
acggccggcaccaaggtcagccaccacgtcatcttcggcggcgtctccatccgtccgcag
atcgacgcgatgcgccgcggcgtcgacatcgtcatcgcgacgcccggccgcctgctcgac
ctggtcgaccagcgcgccatctcgctgaccgacgtccgccacgtcgtcctcgacgaggcc
gaccgcatgctcgacatgggcttcgtgcgcgacgtcatgaagatcgtcggcatgctgccg
aagcagcgccagtcgctgctgttctcggcgaccatgccgcgttcgatcgccgacctcgcc
gccaagatcctgaccaacccggtccgtttcgaagtgacgccggaagtcgtcaccgtcgag
aagatccagcagagcgtctatctggtgccgcagaaggccaagaagctctggctgatcgag
gcgctgtccaagccggaattcaccaaggtggtgatcttcacccgcaccaagcacggcgcc
aacaagctgtccgaggatctcggcaaggccggcatcgaggccggcgcgatccacggcaac
aagagccaggccgcgcgccagaaggcgcttgcgaccttccattcgggcaagaccggcgtg
ctggtcgcgaccgacattgtcgcccgcggcatccatgtcgacgacatcagccacgtggtg
aatttcgacctgccggaagagccggaaagctacgtccaccgcatcggccggacggcgcgt
gccggcaagtccggcgcggcgatcgcgctggtcgatccgtccgagcgctcgaagctgcgc
agcatcgagcggctgaccggcatcaccttcgacgtcgtccagaccgacttcctcggcaat
atcgacctcgctgccgagccgacgcgcccggcccgcacaggccggccgccgaaccgttcg
ggcaagccgcagggccagcgccgcgatggccagaagccgggcggccagcgtccggccggc
gagaaccgcaaccgcaacgccgaccccaagggtgccggtcgcggcaatcgccgccagggc
cgcggcggtggcggacgcccgcaggcagcgaccgcctga
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