Aurantimonas sp. HBX-1: LXB15_08560
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Entry
LXB15_08560 CDS
T07802
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aub
Aurantimonas sp. HBX-1
Pathway
aub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXB15_08560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aub03019
]
LXB15_08560
03009 Ribosome biogenesis [BR:
aub03009
]
LXB15_08560
Enzymes [BR:
aub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LXB15_08560
Messenger RNA biogenesis [BR:
aub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LXB15_08560
Ribosome biogenesis [BR:
aub03009
]
Prokaryotic type
rRNA processing factors
LXB15_08560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UIJ74084
LinkDB
All DBs
Position
complement(1801992..1804787)
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AA seq
931 aa
AA seq
DB search
MANKMLIDASHPEETRVVVVRGSRIEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPKADRQALIEEDLARAEEEEIAEDAKVARSQQNKRPARN
RAAEREDHDGDSVSEEVEEAGNASETGHSGEDHRDDENHETRSRDAEEGDDEASGSNEAD
TESGDNGGGEREQRNRRRGRGRRNRARSGGDDEQSDENGEEEEIDEVGSEDAMEEVPVRQ
VRPRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISR
KITNAVDRKRLKDVVRELEVPRGMGIILRTAGANRTKAEVKRDYEYLMRLWETVRNVTLS
SIAPALVYEEGSLIKRSIRDLYNKDIDQILVAGEGGYREAKDFMRMLMPSQAKAVQPYRD
PTPIFARQGIEGQLDRMLQPHVTLKSGGYIIINQTEALVAIDVNSGRSTKEHSIEDTAYQ
TNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKMKDCLKSDRARIQVGRISH
FGLMEMSRQRIRASVLESTMQTCPVCEGTGHIRSASSLALHVLRTIEEHLQKHSSHDLIV
KVPTATALYVLNEKRKRIEELERLYGLRILIEADESAGRQGIQIDHGAEAPRAPLPMEAI
RSDAVAAIDAAEEAADEEAARAAAVDIAETDESEVEAEGQAEEATDRSESGRPRRRRRRG
RRRDGDKSETEATASDDSNGSFAEDDDSETDPSEPHHAVASDDDERGRRRRRRGRRGGRR
NREDTPENGESGDTETPIAATGFVADAAEDRANADQFFPEAPVAAEVEAQPVHAAADEAY
RAEPEPEATEAPAEIASEPAVVAESQQAPAEAASSDDGSASSAANDDQPAVDVEPAPAPR
DPVVTSGNAVETGKEEEKPRRTGWWARRSFF
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagatgctgatcgacgcctcccatccggaggagacccgcgtcgtcgtcgtt
cgcggtagcaggatcgaggaattcgacttcgagtcggaacacaagaagcagctcaaagga
aacatctacctcgccaaggtgacgcgggtcgaaccctcgctccaggccgctttcgtcgag
tatggcggcaaccgccacggcttcctcgccttcaacgaaatccatcccgactactaccag
atccccaaggccgaccgtcaggcgctgatcgaggaagacctcgccagagccgaggaagag
gagatcgccgaagacgccaaggtcgcgcgcagccagcagaacaagcgccctgcccgcaac
cgcgccgccgagcgcgaggaccatgacggcgacagcgtttccgaagaggtcgaggaagcc
ggcaacgcctccgagaccgggcactccggcgaagatcatcgggacgacgagaaccacgag
acccgctctcgcgacgccgaggagggtgacgacgaggcgtccggttcgaacgaggccgat
acagagtcaggcgacaatggcggcggcgagcgcgagcagcgcaaccgccggcgtggccgt
ggccgccgcaaccgcgcccgttcgggcggcgacgacgagcagtcggacgagaatggcgag
gaagaggagatcgacgaggtcggctccgaggatgcgatggaggaggtcccggtccgccag
gtccgcccgcgccgccagtacaagatccaggaggtcatcaagcgccgccagatcctgctg
gtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggccctcaccacctatctgtcg
ctggccggccgctactcggtgctgatgccgaacaccgcgcgcggcggcggcatctcccgc
aagatcaccaacgccgtcgaccgcaagcgcctcaaggacgtggtgcgcgagctcgaggtg
ccgcgcggcatgggcatcatcctgcgtaccgccggcgccaatcgcaccaaggccgaggtc
aagcgcgactacgaatatctgatgcggctgtgggagacggtccgcaacgtcacgctgtcg
tcgatcgcccctgccctcgtctacgaggaaggcagcctgatcaagcggtcgatccgcgac
ctctacaacaaggatatcgaccagatcctcgttgccggcgaaggcggctaccgcgaagcc
aaggacttcatgcggatgctgatgccgagccaggcaaaggcggtgcaaccctaccgcgac
ccgacgccgatcttcgcgcgccagggcatcgaggggcagctcgaccgcatgctgcagccg
catgtgacgctgaagtccggcggctacatcatcatcaaccagaccgaggcgctggtcgcc
atcgacgtcaactcgggccgctccaccaaggagcactcgatcgaggacaccgcctaccag
accaatctagaagcggcggaggaagtggcgcgccagctgcggctgcgcgatctcgccggc
ctgatcgtcatcgacttcatcgacatggaggaaaagcgcaacaaccgcgccgtcgagaag
aagatgaaggactgcctgaagagcgaccgcgcgcgcattcaggttggccgaatctcgcat
ttcggcctgatggaaatgagccgccagcgcatccgcgccagcgtgctggaatcgaccatg
cagacctgcccggtctgcgagggcacgggacacatccgttccgcctcttcgctggcgctg
cacgtgctgcgcacgatcgaggagcacctgcagaagcattcgagccacgacctcatcgtc
aaggtgccgacggcgacggcgctctacgtgctcaacgagaagcgcaagcgcatcgaggag
ctggagcggctgtacggcctgcgcatcctgatcgaggccgacgagagcgccggtcgccag
ggaatccagatcgaccatggcgcggaagccccgcgcgcaccgctgccgatggaggcgatc
cggtccgatgcggtggctgccatcgacgccgcggaagaggccgccgatgaagaggccgcg
cgcgccgctgccgtcgacatcgccgagacggacgagagcgaagtcgaagcagaaggccag
gccgaggaagccaccgaccgttccgaaagcggccggccacggcgtcgcaggcgtcgggga
cgccggcgggacggcgacaagagcgagaccgaggccaccgcttcggacgacagtaacggt
tccttcgccgaggacgacgacagcgagaccgatccgtccgaaccgcaccatgcggtcgcg
agcgatgacgacgagcggggacgccgccggcgccggcgcggtcgccgtggtggccgccgt
aaccgcgaggacacgccggagaacggcgagtcgggcgacaccgagacgccgatcgctgcg
actggcttcgtcgccgacgcggcggaagatcgggccaacgccgatcagttcttcccggag
gcgcccgtcgcggcggaagtcgaggcccagccggtccatgccgcggctgacgaagcctac
cgggcggaacccgagccggaagcgactgaagccccggccgagatcgcgtcggagccggca
gtcgtggccgagagccagcaggctccggccgaagcggcatcgtccgacgatggcagcgca
agcagcgccgccaacgacgaccagccggcggtcgacgtggagccggcaccggctccgagg
gacccggtggtgacatccgggaacgccgtcgagaccggcaaggaagaagaaaagccgcgc
cgcaccggctggtgggcccgccgcagcttcttctga
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