Aurantimonas sp. HBX-1: LXB15_18100
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Entry
LXB15_18100 CDS
T07802
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
aub
Aurantimonas sp. HBX-1
Brite
KEGG Orthology (KO) [BR:
aub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aub03032
]
LXB15_18100 (gyrB)
03400 DNA repair and recombination proteins [BR:
aub03400
]
LXB15_18100 (gyrB)
Enzymes [BR:
aub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LXB15_18100 (gyrB)
DNA replication proteins [BR:
aub03032
]
Prokaryotic type
DNA Topoisomerases
LXB15_18100 (gyrB)
DNA repair and recombination proteins [BR:
aub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LXB15_18100 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
Toprim_4
FlgK_2nd
Motif
Other DBs
NCBI-ProteinID:
UIJ71589
LinkDB
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Position
3816930..3819365
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AA seq
811 aa
AA seq
DB search
MSAANDTNPSAESDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVLDNSIDE
ALAGHATGVTVTLNPDGSCTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYK
VSGGLHGVGISVVNALSVWLKMTIKRQGKIHEMSFTEGVPDAPLKAIGDSGGETGTTITF
LPSPATFTGVIDFDYATLEHRLRELAFLNSGVRIVLSDRRHADEKRTELFYEGGLKAFVE
YLDRARKPLISEPIVLHGEKDGIVVEAALWWNDSYNENVLCFTNNIPQRDGGTHMAGFRG
ALTRQVTGYAEASGILKKEKVSLTGDDSREGLSCVLSVKVPDPKFSSQTKDKLVSSEVRP
VVESLVNETLSSWFEEHPQEAKIVIGKVVEAASAREAARKARELTRRKGALDITSLPGKL
ADCQERDPAKSEIFIVEGDSAGGSAKGARSRQNQAILPLRGKILNVERARFDRMLGSDQI
GTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHV
FIAQPPLYKVTRGKQSQYLKNEKALENYLIEGGLDDASLTLESGEVRVGRDLRSVVDDAL
QLRQVMAGLHSRYDRSAVEQAAICGALTAEIAEDPAQAPAMAQRIAERLDLVAEETERGW
TGEAIDGGYRFARTVRGVTEAQTLDAALINSGDALQLNRLAGRLAEVYRGLPVLRRKETE
RPLSGPLELLLAVFEVGRKGIATQRYKGLGEMNPEQLWETTLDPDARTLVRVKINDATDA
DQLFSRLMGDEVEPRREFIQDNALSVANLDI
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctgcgaacgacacgaaccccagcgccgaatccgattatggcgccgattcgatc
aaggtgctcaagggtttggacgcggttcgcaagcgtcccggcatgtatatcggcgacacc
gacgacggctccggcctgcaccacatggtctacgaggtgctggacaactcgatcgacgag
gcgctggccggccacgccaccggcgtcaccgtcacgctgaaccccgacgggtcctgcacc
gtcaccgacaacggccgcggcatcccgacggatatccacaccggcgagggcgtctcggcg
gcagaggtcatcatgactcagctgcatgccggcggaaagttcgaccagaattcctacaag
gtttccggcggcctgcacggcgtcggcatctcggtggtcaacgcgctgtcggtctggctg
aagatgaccatcaagcgccagggcaagatccacgagatgtcgttcaccgagggagtgccg
gacgcgccgctgaaggcgatcggcgattccggcggcgagaccggcacgacgatcaccttc
ctgccctcgcccgccaccttcaccggcgtcatcgacttcgactacgcgacgctggagcac
cggctgcgcgagctcgccttcctcaactcgggcgtacgcatcgtgctctccgaccggcgc
cacgccgacgagaagcgcacggagctgttctacgagggcggcctcaaggccttcgtcgaa
tatctcgaccgcgcccgcaagccgctgatcagcgagccgatcgtgctgcacggcgagaag
gacggcatcgtcgtcgaggcggcgctgtggtggaacgacagctacaacgagaacgtcctc
tgcttcaccaacaacattccgcagcgtgacggcggcacccacatggccggcttccgcggc
gcgctgacgcgccaggtcaccggctatgccgaggcctccggcatcctgaagaaggagaag
gtctcgctcaccggcgacgacagccgcgagggcctgtcctgcgtcctgtcggtgaaggtg
ccggacccgaaattctcctcgcagaccaaggacaagctggtctcctccgaggtccggccg
gtggtcgagagcctcgtcaacgagacgctgtcgagctggttcgaggagcatccgcaggaa
gccaagatcgtcatcggcaaggtggtcgaggcggcttccgcgcgcgaggccgcccgcaag
gcgcgcgagctgacgcgccgcaagggcgccctcgacatcacctcgctgcccggcaagctc
gccgactgccaggagcgcgatcccgccaagtcggagatcttcatcgtcgagggcgattcg
gccggcggctcggcaaaaggcgcgcggtcgcggcagaaccaggcgatcctgccgctccgg
ggcaagatcctcaatgtcgagcgggcgcgcttcgaccggatgctcgggtcggaccagatc
ggcacgctgatcaccgcgctcggcacctcgatcggcaaggacgagttcaacgccgacaag
ctgcgctaccacaagatcatcatcatgacggacgccgacgtcgacggcgcccatatccgc
accctgctgctgaccttcttcttccggcagatgccggagctgatcgagcgcggccacgtg
ttcatcgcccagccgccgctctacaaggtgacgcggggcaagcagagccagtacctgaag
aacgagaaggcgctcgagaactacctgatcgagggcggtctcgacgacgcctcgctgacg
ctggaatcaggcgaggtgcgggtcggccgcgacctgcgcagcgtcgtcgacgacgcgctg
cagctgcgccaggtgatggccgggctgcattcgcgctacgaccgcagcgccgtcgagcag
gcggcgatctgcggcgcgctgacggcggagatcgccgaggacccggcgcaggctccggcg
atggcgcagcggatcgccgagcggctcgacctcgtggccgaggagaccgagcgcggctgg
accggcgaggccatcgacggcggctaccgcttcgcccgcacggtgcgcggcgtgaccgag
gcgcagaccctcgacgcggcactgatcaattccggcgacgcgctgcagctcaaccgcctg
gccggccggctggcggaagtgtatcgcggccttcccgtattgcgccgcaaggagaccgag
cggccgctttccggcccgctggagctgctgctggcggtcttcgaggtcggccgcaagggc
atcgcgacgcagcgctacaagggcctcggcgagatgaacccggagcagctctgggaaacg
acgctcgatcccgatgcgcgcacgctggtgcgggtgaagatcaacgacgccaccgacgcc
gaccagctgttctcgcggctgatgggcgacgaggtcgagccgcgccgggagttcatccag
gacaacgccctgtcggtcgccaacctcgacatctga
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