Aneurinibacillus uraniidurans: PO771_18980
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Entry
PO771_18980 CDS
T09970
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aud
Aneurinibacillus uraniidurans
Pathway
aud03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PO771_18980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aud03400
]
PO771_18980 (mfd)
Enzymes [BR:
aud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PO771_18980 (mfd)
DNA repair and recombination proteins [BR:
aud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PO771_18980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WCN37787
LinkDB
All DBs
Position
complement(3768994..3772551)
Genome browser
AA seq
1185 aa
AA seq
DB search
MKGLLETFMHDDEFATIVNGYERGLREQLASGLSGSARQVFFAALYQKIGRPLVIVTHNM
YQAQKVHDDLSQFVPGEELWLYPANEMVLSEVAISSPETLSQRLEVLNALSSGKRGILIV
PYAGVRRSVVPVEKWRQAQITFTVGGEIDRERFLERMIALGYERVEMVETRGEMSVRGGI
IDIFPAYMMHPVRIELFDTEIDSIRTFDSSNQRSIENLQEITVGPTREVFGERDVFLTAA
EKVEAHMKMTLPKIKAKQVQESVMEKVGWEIEQLRQGHTFTGIYKYSSFLYPGHHTLLEY
MSGQPLIIVDEPSRIVESATQMEKDEAEWKIALIQEGEFLPDVEVSHPIEEILSSKKHPI
LHVALFLRQVPKTSPQNIVNFTCKTMQNFHGQMNVLKGELERWKKSNTTVIFCAADEERA
RRLERVFHDYDIEADIVLQPEKALVSRHPVITLGNLQSGFELPMQHLVVITESEVFTQKQ
RKASKTRKSLSNAERIKSYTELVVGDYVVHVNHGIGKYLGIETLDINGIHKDYLHIKYAG
NDKLYVPIEQIDQVQKYVGSEEKEPKVYKLGGTDWKKVKNKVRASVQDIAQDLIKLYAER
QQAKGYAFSKDGEEMREFEAMFPYDETDDQLRTIHEIKEDMEMPRPMDRLLCGDVGYGKT
EVAIRAAFKSVMDGKQVAVLVPTTILAQQHYETFRERFADYPVTISVISRFRTRKEQTQT
LKGVKDGTVDVVIGTHRLLSKDVVFKDLGLLIVDEEQRFGVTHKEKLKRLKTNVDVLTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYSASLVREAIERELAREGQVYFL
YNQVQGIDQMAEQIRMLVPEAKVVVAHGQMSETELESVMLSFLEGEADVLVSTTIIETGV
DIPNVNTLIVTSADRMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLKDAIEELKGEPQKEEE
VHPEITITIDAFIPSDYIQDGKQKIEMYKKFAAVASFSDLDDLTEELMDRFGTIPHSVIN
LLHVAKLRIYARENRIVEIAQKGEAILLTFHEDQTTEVDWSILYDLEGSLSRRISLSRQG
QQVVASLKVKGLKSEEIVEQLEMFFVQFNEAKKKTEGEEAADVAN
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtctactagagacctttatgcatgatgatgagtttgcaaccatcgttaatgga
tatgaaagaggattgcgtgagcagctcgcatcaggactcagcggctcagcgcgtcaggtg
ttttttgctgcgctatatcaaaagatagggcggccacttgtcattgtcacgcacaacatg
tatcaggcacaaaaagtacatgatgatttaagccaattcgtaccaggagaagagttgtgg
ctgtatcctgcaaatgaaatggttctctctgaagtggcgatttcaagcccggaaacgctt
agtcagcgacttgaggtgttgaatgcgctctcaagtgggaagcgtgggattttgattgtg
ccgtatgccggtgtgcgtcgttctgtagtgccagtggagaaatggcgccaggcccagatt
acgtttacggtcggtggagagatcgacagagaacgctttttagagcgaatgattgcactc
gggtatgagcgggttgaaatggtagagacacgcggtgagatgagtgtgcgtggtggaatc
attgatatttttccggcttatatgatgcatccggtgcggattgagctatttgataccgaa
attgattcaattcgtacatttgatagtagcaatcagcgttccattgagaatttgcaggag
attacagtcggaccgacccgtgaagtgtttggggaacgtgatgttttccttactgctgcc
gagaaggtagaagctcatatgaaaatgacgcttccgaagattaaggcaaaacaggtgcag
gaatctgttatggagaaggtcggttgggaaatcgagcagctgcgtcagggacatactttt
actggaatctataaatatagttcgtttttatatccagggcaccatacactgctagagtat
atgagtggccagcccttgattattgtggatgagccgtctcgtattgtagaatctgcgacc
cagatggagaaagacgaagcggaatggaaaatagcacttattcaggaaggagaattcctt
cccgatgtagaggtatctcatcctatagaagagattctttcatcgaaaaagcacccgatt
ttgcatgttgcgctattcttacgacaagttccgaaaacaagcccacaaaatatcgtgaac
tttacttgcaaaaccatgcagaacttccatggtcagatgaatgtgctaaaaggtgagcta
gagcgctggaagaaatcgaacacgaccgttatattttgtgcagcagatgaggaacgcgcc
cgtcgtctcgaacgtgtattccacgattatgacatagaagcagatattgtacttcagccg
gagaaggcgctagtaagcaggcatccggtcattacgcttggtaatctacagagcgggttc
gagctcccgatgcagcatcttgttgtgattacagaaagcgaagtattcacacaaaagcaa
cgtaaggcgtccaaaactcgtaaaagcttaagcaacgccgagcggatcaaaagctacaca
gagcttgtggttggcgattatgttgtgcatgtgaatcatgggattgggaagtatctcggg
attgagacacttgatattaacgggattcataaagattaccttcatattaagtacgcaggc
aatgataagctgtatgtgccgattgaacagatcgatcaggtgcaaaagtatgtcggcagt
gaagaaaaagagccgaaagtatataagcttggcggtacagactggaagaaagttaaaaat
aaagtacgggcatccgttcaagatattgcgcaagacttaattaaactgtatgccgagcgt
cagcaggcaaaaggctatgccttcagtaaagatggagaagaaatgcgcgagttcgaagcg
atgtttccgtatgatgagacagatgatcagctgcgtacgattcacgagataaaagaagat
atggaaatgccccgtccgatggatcgcctgctgtgtggagatgtggggtatgggaagaca
gaggtggccattcgtgctgcttttaagtctgtaatggatggcaagcaagtagccgtgctt
gtgcctaccacgattctggcacagcagcattatgagacattccgagagcgttttgcggac
tatccagttacgatctccgtaattagccgctttcgtacccgcaaggaacagacgcagacg
cttaaaggtgtgaaagatggaacggttgatgttgtgatcgggacacatcgtctgctgtct
aaggatgttgtatttaaagatcttggtctgcttattgtggatgaagagcagcgcttcggt
gtaacgcataaagaaaagctgaagcgcttgaaaacaaacgtcgatgtactgacactgacg
gcaacaccaattccacgtacgcttcacatgtccatgctcggtgtgcgggacctgtccgtt
attgagacaccgccggagaatcggttcccggtgcagacgtacgtaatggaatatagcgca
agtttagtacgggaagcaattgagcgcgaacttgcacgtgaaggtcaagtgtatttctta
tataatcaagtacagggtatcgatcagatggccgagcagattcgaatgcttgtgccggaa
gcgaaagtagtggtggctcacggtcaaatgagtgaaacggaactcgaatcggtcatgctc
agctttctggaaggagaagcggatgtactggttagtaccacgattattgaaaccggtgtt
gatattccaaatgtaaacacattgattgtcacaagtgccgaccgaatgggcttatctcag
ttgtatcagctgcgggggcgtgtcggacgctccaatcgaattgcctatgcatatttcacg
tatcagcgtgataaagtgctgacagaagtagcagagaaacgtctacaggcgattaaagaa
ttcacggaacttggttctggctttaaaattgcaatgcgtgacttgtccattcggggtgcg
ggcaacctgcttggcgctgaacagcatggctttatcgcatcagttggttttgatttatat
agccagatgcttaaggatgccatcgaagagcttaaaggggagccgcaaaaagaagaagag
gttcaccctgagattacgattaccattgatgcgtttattccgtctgattacattcaggac
ggtaaacaaaaaatcgaaatgtataagaaatttgcagccgtggcttcatttagcgatctt
gatgatttgacagaggagctgatggatcgatttggtacgattccacacagtgtaatcaat
cttttgcatgtagctaagctgcgtatatatgcgcgtgaaaaccgaatcgtggagattgcc
cagaagggagaagctattcttctgacattccatgaagatcagacaacggaagtggactgg
agtattttgtatgacttggaaggttcgttgtcgcgccgcatctcattgtcacgtcagggg
caacaagtagtagccagtttgaaggtaaaagggttaaaatcagaagagattgtagaacaa
ctggaaatgttttttgtacaattcaatgaagccaaaaagaaaacagaaggtgaggaagca
gcagatgtggcaaattaa
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