Pukyongia salina: C5O00_14115
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Entry
C5O00_14115 CDS
T05335
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aue
Pukyongia salina
Pathway
aue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5O00_14115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aue03019
]
C5O00_14115
03009 Ribosome biogenesis [BR:
aue03009
]
C5O00_14115
Enzymes [BR:
aue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C5O00_14115
Messenger RNA biogenesis [BR:
aue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C5O00_14115
Ribosome biogenesis [BR:
aue03009
]
Prokaryotic type
rRNA helicases
C5O00_14115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
Cas3-like_C_2
MnmE_helical
Motif
Other DBs
NCBI-ProteinID:
AVI52230
UniProt:
A0A2S0I042
LinkDB
All DBs
Position
complement(3109742..3111493)
Genome browser
AA seq
583 aa
AA seq
DB search
MPTFQSLGLKEQFLQAISDMGFETPSEVQEKTIPILIERETDMVSLAQTGTGKTAAFGFP
MLQKINAESRTTQGLILSPTRELCMQITNELIAYGKYVKGLNIVAIYGGASISDQARKIK
KGAQIIVATPGRMKDMIGRGMIDISKIEYCVLDEADEMLNMGFYEDITEILSHSPSDKST
WLFSATMPKEVATIARKFMHTPIEISVGTKNVGADSVSHEFYMVNARDRYAALKRLADAN
PDIFSVVFCRTKRDTQKVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRTRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIISKSESRKIKAIEKI
IQKQFTQKELPSGMEICEKQLFHLASSIKETEVNHDIDPYLDGINEVLTEFSKEELIKKV
FSVEFTRFYNYYKNSKDLNVAAGDTSMGSEGPSIRFFINLGAKDDFDWMSLKDFLRDLLQ
LSKDDLYKVDVMDSFSFFNVEEKHKELVLHAFESFKLNGRQITVEISKDGRRKGGGRSGR
SGKRDFKKKGKSFGGDKPKFKGKSRRKNQRPNDKGTGGRRRRR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgccaacatttcaatcgttaggattgaaggaacaattccttcaagccatatccgacatg
ggttttgaaaccccttcggaagttcaggaaaaaacaattccaattctcatcgaacgagag
accgacatggtctcactagcacaaacaggtacagggaagacagcagcattcggatttccg
atgcttcagaagataaatgccgaaagccgtaccacccagggacttatcctgtccccaaca
cgagaactctgcatgcagatcactaatgagttgatagcctacggcaagtacgtgaaaggc
ctcaatattgtagctatttacggtggtgccagtatttcagaccaggctcgtaagatcaag
aaaggcgctcagataatcgtggctactccgggaaggatgaaggatatgataggtcgaggg
atgatcgatatttccaagatagaatattgtgttctcgacgaagccgacgaaatgctcaat
atgggcttttacgaggatataaccgaaattctttcccattcgccatccgataaaagtacc
tggctctttagtgctaccatgccaaaagaagttgctaccatcgcaagaaaattcatgcat
acgcctatcgagatctctgttggaaccaagaatgttggtgcagatagcgtttcgcatgag
ttctatatggttaacgcaagagaccgttacgcggccctgaaaagactggccgacgccaat
ccggatatattttcggtggtgttttgccgtaccaaaagggatactcagaaagtggccgag
aagttaatagaagacggttataatgccgccgcattgcatggagatctgagtcagaatcaa
cgcgacctcgtaatgaagtcgtttcgcactcgccaaatacagatgttggttgccaccgat
gtggccgcgaggggaatagacgtggacgatattacccacgtgatcaattaccagctaccc
gatgagatcgagacctacactcaccgaagtgggcgtaccggccgagcagggaaaagcggg
gtatctatggtgatcatctctaaaagtgagtctcgaaagataaaggccatagagaagatc
attcagaaacaatttacgcagaaggagcttccttcgggcatggagatctgtgaaaagcaa
ttattccatctggccagcagcattaaggagacggaggttaatcacgatatcgatccgtat
ttggatggaataaacgaagtattgaccgaattcagtaaagaagaacttatcaagaaagtt
ttctctgtagaatttacccgtttctataactactacaaaaactctaaagacctcaatgtg
gccgccggagataccagtatgggatctgaaggccctagtatccgtttctttatcaacctt
ggcgccaaagacgatttcgattggatgtcgctgaaggatttccttcgcgacctgctccag
ttaagcaaggacgatctatacaaggtagatgtgatggatagtttttctttcttcaatgtg
gaagaaaagcataaggaactggttttacatgccttcgagtcgttcaagctaaatggcaga
cagatcactgtcgagatctcgaaagacggccgaagaaaaggtggcggacggtccgggaga
agcgggaagcgcgactttaagaagaagggtaaatcctttggaggagacaagccaaaattt
aaagggaaaagcagacgcaagaatcaacgaccgaacgataaaggtacaggtggtcgtagg
agaagacgttaa
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