Aerococcus urinaeequi: APT62_05350
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Entry
APT62_05350 CDS
T04249
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aui
Aerococcus urinaeequi
Pathway
aui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT62_05350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aui03019
]
APT62_05350
03016 Transfer RNA biogenesis [BR:
aui03016
]
APT62_05350
Enzymes [BR:
aui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
APT62_05350
Messenger RNA biogenesis [BR:
aui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APT62_05350
Transfer RNA biogenesis [BR:
aui03016
]
Prokaryotic type
tRNA degradation factors
APT62_05350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ALZ87924
LinkDB
All DBs
Position
complement(1184494..1187004)
Genome browser
AA seq
836 aa
AA seq
DB search
MSRKINYMKKEILAELASSEENYTAQTLSQALSYDQADDFADLVKTIAKLEQAGDIAITS
NGTLSIKQDKATYTGVFTQNARGFGFVKTDELEKDIFIGKGKTNGALQSDEVRVKITREA
HPANDKSAEGEIAEVLVRHTTRLTGEFTPFNDNDKASTGFIGSVKPQNHGLDNLTALVRP
DGLHPVEGEIVVVELVDYPDDQHPFAVAGNVIQQIGHKDEPGVDILAILNMFEIPHEFPN
EVLDHANEVPETISNDDLKGRKDHRDLLTITIDGADAKDLDDAISLSKLPNGNYQLGVHI
ADVSYYVTEDSAMDKEAYERGTSVYLTDRVVPMLPQRLSNGICSLHPNVDRLTMTAIMEI
DHNGGIVDYDIHPSIIHSDYRMTYSDVNAIITDNDPELREKYSEITDMLENMGALHEILY
NKRVSRGAIDFDSREAKIIVDGEGHPTAIEVRDRGVGERMIESFMLSANETVAGHFTRKV
LPFIYRVHEQPDEDRMQRFLEFVTAFGIVPQGTKSSIRPKDIQNVLREVEGAAFQPVVSM
MLLRSMKQAKYDIEPIGHYGLAAEDYTHFTSPIRRYPDLIVHRLIHFYESHARPNADKQE
KMKMKLSDIAEHSSKMERRSVDAERETDSLKKTEFMLDKIGMEFEGIISSVTGFGLFVEL
PNTVEGLVHISMLKDDYYNFVDSQLVMIGEHTGKTYRIGDRVTVKVMDVNTDTRDIDFVI
VKSEDNGESTSLQRQDNRKGGRGNNKGRKGNNRSRRRQQDKESNGGNRRNDQSGASKSHK
ENKNKHTGKPHQKGKKSGSKPQNGKAGGQGQNNKQNSNSKKSNQKRSFVIRQSKRK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
gtgagtagaaaaattaattatatgaaaaaagaaatccttgccgagttggcaagttcagaa
gaaaattacacagcacaaactttaagccaagccttgtcttatgaccaagcagacgatttt
gccgatttggtgaaaaccatcgctaaattagagcaagctggtgacattgccattacaagc
aacggtaccttaagtatcaaacaagacaaagccacttatacaggggtatttacccagaat
gcacgtggatttggtttcgtcaaaactgatgaacttgaaaaagacattttcatcggtaaa
ggcaaaaccaatggtgccttgcaaagtgatgaagtgcgggtgaaaatcaccagagaagct
catcctgccaatgacaagtcagctgaaggtgaaattgctgaagtattagtccgtcataca
acacgccttacaggtgagtttacgccctttaatgataatgataaagcgtcaacaggtttt
atcggtagcgtgaaaccgcaaaaccatggtttagacaatttaaccgccttagtaagacca
gatggcttacacccagtagagggtgaaattgttgttgtcgaattagtggattatccagat
gaccaacacccatttgcagttgcgggtaacgtcatccaacaaatcggtcataaagatgaa
ccgggtgtagatatccttgccattttaaacatgtttgaaattccgcatgaattccctaat
gaagttttagatcatgccaatgaagtgcctgaaaccatctcaaatgatgacttaaaagga
cgtaaggaccaccgtgacctgttgactattacaattgatggggcagatgcaaaagacttg
gatgatgccatctcattaagtaaattgccaaatggaaactatcaattaggcgtccatatt
gctgacgtgtcttattatgtgacagaagattcagcaatggataaagaagcctatgaacgt
gggacgtcagtttatctaacagaccgcgtagtcccaatgttaccgcaacgtttatctaat
ggtatatgttcattacatccaaatgtggaccgtttaacaatgacagctatcatggaaatt
gaccataacggcggtattgttgattatgatattcatccgtcaattatccactcagattac
cgaatgacttattcagatgtaaatgccattatcacagataatgatccagaattacgggaa
aaatacagtgaaatcactgacatgttagaaaatatgggtgctttacatgagattttatac
aataaacgtgttagtcgtggtgccattgactttgactctcgtgaagcgaaaattatagtt
gatggtgaaggtcatcctacagcgattgaagtacgtgatcgtggcgttggagagcggatg
attgaatcattcatgttatcggcgaacgagacagttgccggccactttacaaggaaagta
ttgccattcatctaccgtgtccatgagcaaccggatgaagacagaatgcaacgtttctta
gaatttgtgacggcctttggtattgtgccacaagggacaaaatcttctattcggccaaaa
gatattcaaaatgtcttgcgtgaggttgaaggagcggctttccaaccggttgtatccatg
atgttactgcgttcaatgaaacaagcgaaatatgatattgaaccaatcggccattatggt
ttggcggctgaagattacacccacttcacatcaccaatccgtcgttacccagacttgatt
gttcatcgtttaattcacttctatgaaagtcatgcacgtccaaatgcagacaaacaagag
aagatgaagatgaaattatctgatatagcagaacattcttccaagatggaacgtcgtagt
gtggatgctgaacgtgaaacggatagcttgaagaaaacagaatttatgctggataaaata
ggcatggaatttgaaggaatcatttcatcggttactggttttggtttattcgttgaatta
ccaaatacagttgaaggtttagtccatatttctatgctaaaagacgattactacaacttt
gtagatagccagttagtgatgattggggagcatactggaaaaacttaccgtattggggac
agagtgactgttaaagttatggatgttaacacagatacacgtgacatcgattttgtcatt
gtgaagagtgaagataacggtgaatcaactagtttacagcgtcaagataaccgtaaaggt
ggacgtggcaataataaaggccgtaaaggcaacaatagaagccgtagacgtcaacaagat
aaagaatcaaatggtggcaaccgccgaaatgaccaatctggtgctagcaagtctcataag
gagaataagaacaagcacacaggtaaacctcatcagaagggtaagaagtctggtagcaag
ccacagaacggcaaagctggcggtcaaggacaaaataataagcaaaatagcaatagtaaa
aaatcaaatcagaaacggagctttgtcattcgtcaaagtaaacgcaaataa
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