KEGG   Aerococcus urinaeequi: APT62_05350
Entry
APT62_05350       CDS       T04249                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
aui  Aerococcus urinaeequi
Pathway
aui03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aui00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    APT62_05350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aui03019]
    APT62_05350
   03016 Transfer RNA biogenesis [BR:aui03016]
    APT62_05350
Enzymes [BR:aui01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     APT62_05350
Messenger RNA biogenesis [BR:aui03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     APT62_05350
Transfer RNA biogenesis [BR:aui03016]
 Prokaryotic type
  tRNA degradation factors
   APT62_05350
SSDB
Motif
Pfam: RNB CSD2 S1 OB_RNB S1_RRP5 RNase_II_C_S1
Other DBs
NCBI-ProteinID: ALZ87924
LinkDB
Position
complement(1184494..1187004)
AA seq 836 aa
MSRKINYMKKEILAELASSEENYTAQTLSQALSYDQADDFADLVKTIAKLEQAGDIAITS
NGTLSIKQDKATYTGVFTQNARGFGFVKTDELEKDIFIGKGKTNGALQSDEVRVKITREA
HPANDKSAEGEIAEVLVRHTTRLTGEFTPFNDNDKASTGFIGSVKPQNHGLDNLTALVRP
DGLHPVEGEIVVVELVDYPDDQHPFAVAGNVIQQIGHKDEPGVDILAILNMFEIPHEFPN
EVLDHANEVPETISNDDLKGRKDHRDLLTITIDGADAKDLDDAISLSKLPNGNYQLGVHI
ADVSYYVTEDSAMDKEAYERGTSVYLTDRVVPMLPQRLSNGICSLHPNVDRLTMTAIMEI
DHNGGIVDYDIHPSIIHSDYRMTYSDVNAIITDNDPELREKYSEITDMLENMGALHEILY
NKRVSRGAIDFDSREAKIIVDGEGHPTAIEVRDRGVGERMIESFMLSANETVAGHFTRKV
LPFIYRVHEQPDEDRMQRFLEFVTAFGIVPQGTKSSIRPKDIQNVLREVEGAAFQPVVSM
MLLRSMKQAKYDIEPIGHYGLAAEDYTHFTSPIRRYPDLIVHRLIHFYESHARPNADKQE
KMKMKLSDIAEHSSKMERRSVDAERETDSLKKTEFMLDKIGMEFEGIISSVTGFGLFVEL
PNTVEGLVHISMLKDDYYNFVDSQLVMIGEHTGKTYRIGDRVTVKVMDVNTDTRDIDFVI
VKSEDNGESTSLQRQDNRKGGRGNNKGRKGNNRSRRRQQDKESNGGNRRNDQSGASKSHK
ENKNKHTGKPHQKGKKSGSKPQNGKAGGQGQNNKQNSNSKKSNQKRSFVIRQSKRK
NT seq 2511 nt   +upstreamnt  +downstreamnt
gtgagtagaaaaattaattatatgaaaaaagaaatccttgccgagttggcaagttcagaa
gaaaattacacagcacaaactttaagccaagccttgtcttatgaccaagcagacgatttt
gccgatttggtgaaaaccatcgctaaattagagcaagctggtgacattgccattacaagc
aacggtaccttaagtatcaaacaagacaaagccacttatacaggggtatttacccagaat
gcacgtggatttggtttcgtcaaaactgatgaacttgaaaaagacattttcatcggtaaa
ggcaaaaccaatggtgccttgcaaagtgatgaagtgcgggtgaaaatcaccagagaagct
catcctgccaatgacaagtcagctgaaggtgaaattgctgaagtattagtccgtcataca
acacgccttacaggtgagtttacgccctttaatgataatgataaagcgtcaacaggtttt
atcggtagcgtgaaaccgcaaaaccatggtttagacaatttaaccgccttagtaagacca
gatggcttacacccagtagagggtgaaattgttgttgtcgaattagtggattatccagat
gaccaacacccatttgcagttgcgggtaacgtcatccaacaaatcggtcataaagatgaa
ccgggtgtagatatccttgccattttaaacatgtttgaaattccgcatgaattccctaat
gaagttttagatcatgccaatgaagtgcctgaaaccatctcaaatgatgacttaaaagga
cgtaaggaccaccgtgacctgttgactattacaattgatggggcagatgcaaaagacttg
gatgatgccatctcattaagtaaattgccaaatggaaactatcaattaggcgtccatatt
gctgacgtgtcttattatgtgacagaagattcagcaatggataaagaagcctatgaacgt
gggacgtcagtttatctaacagaccgcgtagtcccaatgttaccgcaacgtttatctaat
ggtatatgttcattacatccaaatgtggaccgtttaacaatgacagctatcatggaaatt
gaccataacggcggtattgttgattatgatattcatccgtcaattatccactcagattac
cgaatgacttattcagatgtaaatgccattatcacagataatgatccagaattacgggaa
aaatacagtgaaatcactgacatgttagaaaatatgggtgctttacatgagattttatac
aataaacgtgttagtcgtggtgccattgactttgactctcgtgaagcgaaaattatagtt
gatggtgaaggtcatcctacagcgattgaagtacgtgatcgtggcgttggagagcggatg
attgaatcattcatgttatcggcgaacgagacagttgccggccactttacaaggaaagta
ttgccattcatctaccgtgtccatgagcaaccggatgaagacagaatgcaacgtttctta
gaatttgtgacggcctttggtattgtgccacaagggacaaaatcttctattcggccaaaa
gatattcaaaatgtcttgcgtgaggttgaaggagcggctttccaaccggttgtatccatg
atgttactgcgttcaatgaaacaagcgaaatatgatattgaaccaatcggccattatggt
ttggcggctgaagattacacccacttcacatcaccaatccgtcgttacccagacttgatt
gttcatcgtttaattcacttctatgaaagtcatgcacgtccaaatgcagacaaacaagag
aagatgaagatgaaattatctgatatagcagaacattcttccaagatggaacgtcgtagt
gtggatgctgaacgtgaaacggatagcttgaagaaaacagaatttatgctggataaaata
ggcatggaatttgaaggaatcatttcatcggttactggttttggtttattcgttgaatta
ccaaatacagttgaaggtttagtccatatttctatgctaaaagacgattactacaacttt
gtagatagccagttagtgatgattggggagcatactggaaaaacttaccgtattggggac
agagtgactgttaaagttatggatgttaacacagatacacgtgacatcgattttgtcatt
gtgaagagtgaagataacggtgaatcaactagtttacagcgtcaagataaccgtaaaggt
ggacgtggcaataataaaggccgtaaaggcaacaatagaagccgtagacgtcaacaagat
aaagaatcaaatggtggcaaccgccgaaatgaccaatctggtgctagcaagtctcataag
gagaataagaacaagcacacaggtaaacctcatcagaagggtaagaagtctggtagcaag
ccacagaacggcaaagctggcggtcaaggacaaaataataagcaaaatagcaatagtaaa
aaatcaaatcagaaacggagctttgtcattcgtcaaagtaaacgcaaataa

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