Aerococcus urinaeequi: APT62_08940
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Entry
APT62_08940 CDS
T04249
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aui
Aerococcus urinaeequi
Pathway
aui03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aui00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APT62_08940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aui03021
]
APT62_08940
03400 DNA repair and recombination proteins [BR:
aui03400
]
APT62_08940
Enzymes [BR:
aui01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APT62_08940
Transcription machinery [BR:
aui03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APT62_08940
DNA repair and recombination proteins [BR:
aui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APT62_08940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ALZ88559
UniProt:
A0AAC8X0U9
LinkDB
All DBs
Position
complement(1927430..1931086)
Genome browser
AA seq
1218 aa
AA seq
DB search
MVDVNRFESMRIGLASPDKIRSWSYGEVKKPETINYRTLKSEKEGLFDERIFGPSKDWEC
SCGKYKGIRYAGVVCDRCGVEVTRSKVRRERMGHIELATPVTHIWYFKGIPSRMGLMLDM
SPRSLEEVIYFASYVVTDAGDTPLDYKQLLSEKEYRDNKREYGEGFKAAMGADAIKTLLS
QVQIDSEVAELKEELKTAKGQKRTRAIRRLDVLDAFRKSGNDPAWMVMDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALFDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQAGLPKE
MALELFKPFLMRELVARDMAINVKHAKRKIEHHDEDVWDVLGEIIREHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLVCEAYNADFDGDQMAVHLPLGEEAQAEARLLMLAATHIL
NPKDGQPVVTPSQDMVLGNYYLTMEEPEVMGEGMLMSSINEAHIAYTNGYVQLHTRVAFP
TDALPKKPWTENQKGKLMVTTIGKLFFNEVMPEEFPYINEPTTENLESSLSDKFIMEPGT
DVKEFISRQDMVSPFKKKYLARIIAQVFKVSKITETSIILDKMKDLGFKYSTRSGITVGV
ADITNLESKAASIQKGHDRVDKITKQYRRGLITNDERYDQVIDTWNKVKDEIQIALMDSL
DQDNPFFIMSDSGARGNISNFTQLAGMRGLMAGPNGKIIELPILSNFREGLTVQEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREADCGTDRGLAIEAIKNGNEVIETLE
ERLTGRYLQKEVRHPETGEIIAHHNELIDEQTARRIVEAGIEQVTIRSAFTCNTRHGVCK
HCYGRDLSTNQEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIV
EARHPKGRAVITEVAGEIEAIEEDEASRTKTVFVKGMTDSREYKVPYTARMNVAEGDTVH
RGQQLTEGSIDPKDLLRVTNTLTVETYMLDEVQRVYRSQGVDINDKHVEVMVRQMLRKVR
VLDPGSTDLLPGKLMDTADFTDANTQAIRSGELPATARPVLLGITKAALETNSFLSAASF
QETTKVLTDAAIRGKEDHLLGLKENVIIGKIIPAGTGMARYREMEPKKIGDTQQLIYGEE
ADVDTEISPIDYSSIQEN
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
ttggtagatgtaaatagatttgaaagcatgcgtatcgggttggcttcaccagacaagatc
agatcttggtcttatggtgaggttaagaaacctgaaaccatcaactaccgtacacttaaa
tcagaaaaagaaggtctattcgatgaaagaatctttggaccttctaaagattgggaatgt
tcttgtggtaaatacaagggcattcgctatgctggtgttgtttgtgaccgttgtggcgtt
gaagttacacgttctaaagtacgtcgtgagcgtatgggtcacattgagttagcgacacct
gtaacacatatttggtactttaaaggtatcccatctcgtatgggcttaatgttagacatg
agcccacgttctcttgaagaagtaatttactttgcatcatatgttgtaacagatgcaggt
gatacaccactagattacaaacaattgttatctgaaaaagaataccgcgataataaacgt
gagtatggtgaaggcttcaaagcagcaatgggtgcagatgcaatcaagaccttgttatca
caagtacaaattgatagcgaagttgctgaattaaaagaagaattgaaaacagctaaaggt
caaaaacgtacacgtgcaatccgtcgtttagatgttttagatgctttccgtaagtctggt
aacgatccagcttggatggttatggatgttattccagttatcccaccagaactacgtccg
atggttcagttagatggtggtcgtttcgctacttctgacttgaatgatttataccgtcgt
gtaattaaccgtaacaaccgtttgaaacgtctattagacttaaatgcaccaaatattatt
gtgcaaaacgaaaaacgtatgttacaagaagcagtggatgccttattcgataacggtcgc
cgtggtcgtccagttactggtccaggtaaccgtccgttgaaatcattgtcacacatgctt
aaaggtaagcaaggacgtttccgtcaaaacttacttggtaaacgtgttgactactctggt
cgttctgtaatcgttgttggtccatcattgaagatgtaccaagctggtttaccaaaagaa
atggcccttgaattattcaaaccattcttaatgcgtgaattggtagcccgtgatatggca
atcaacgtgaaacatgctaaacgtaaaattgagcaccatgatgaagatgtttgggacgtt
ttaggcgaaatcattcgtgaacatccagtgctattgaaccgtgcacctaccttacaccgt
ttaggtatccaagcctttgaaccagtattggttgaaggtaaagcgattcgtcttcaccca
cttgtgtgtgaagcctataatgccgactttgatggtgaccaaatggccgtccatttacca
ttaggtgaagaagcgcaagcagaggcacgtttattaatgctagctgctacgcatatcttg
aaccctaaagatggtcaaccagttgttacaccgtctcaagatatggtcttaggaaactac
tacctaacaatggaagaacctgaagtaatgggtgaaggtatgttaatgtcttctattaat
gaagcgcatatcgcctacactaacggttacgtgcaattacatacacgagttgcattccca
acagatgcactacctaaaaaaccttggactgaaaaccaaaaaggtaaattgatggtgaca
actatcggtaaattattctttaacgaggtaatgcctgaagaattcccgtacatcaacgaa
ccaacaactgaaaacttagaatcatctctatctgacaagttcatcatggaaccaggtaca
gacgtaaaagagttcatcagtcgtcaagatatggtttcaccattcaagaaaaaatactta
gcgcgtatcatcgcacaagtatttaaagtatctaagattactgaaacttcaattatcttg
gataaaatgaaagacttaggtttcaaatactctacacgttcaggtattaccgtaggtgtg
gcagatattacaaacctagaatcaaaagcggcgtctatccaaaaaggacatgaccgtgtt
gacaagattacaaaacaataccgtcgtggtttgattacaaacgacgaacgttatgaccaa
gttattgatacttggaacaaagtaaaagatgaaatccaaatcgccctaatggactcactt
gatcaagataacccattcttcatcatgtccgattcaggtgcccgtggtaacatttctaac
tttacccaacttgctggtatgcgtggtttgatggccggacctaacggtaagatcatcgag
ttacctatcttgtctaacttccgtgaaggtttgaccgtacaagaaatgtttatctccact
cacggtgcccgtaaaggtatgaccgatacggcccttaagacagccgattcaggttacttg
actcgtcgtcttgttgacgttgcccaagatgtcatcattcgtgaagcagactgtggcact
gaccgtggtttagcgattgaagcaatcaagaatggtaacgaagtgattgaaacacttgaa
gaacgtttgactggccgttacttacaaaaagaagtacgtcatccagaaactggcgaaatc
attgcgcaccacaacgaattaatcgacgaacaaactgctcgtcgcatcgttgaagctggt
attgagcaagtaacgattcgttcagccttcacatgtaacactcgtcacggtgtatgtaaa
cattgttacggacgcgacctatctactaaccaagaggtagaagtaggggaagcagttggt
acaattgctgcacaatctatcggtgagccaggtacacagttaacaatgcgtacattccat
actggtggggttgccggtgatgacatcactcaaggtcttcctcgtatccaagagattgtt
gaagcacgtcatccaaaaggtcgtgccgtgattactgaagttgctggagaaatcgaagca
atcgaagaagacgaagcaagccgtacgaagacagtatttgttaaaggtatgacagactct
cgtgagtataaagtaccttacacagcgcgtatgaacgttgctgaaggcgatactgttcac
cgcggacaacaattaacagaaggttcaatcgatcctaaagacttactacgtgtaacaaac
acactaactgttgaaacatacatgttagatgaagttcaacgtgtataccgctctcaaggg
gtagacattaatgataaacacgtggaagttatggttcgtcaaatgctacgtaaagtacgt
gtccttgatccaggttcaacagacttgttaccaggtaaattaatggatactgcagacttt
acagatgccaatacgcaagctatccgttcaggtgaactacctgcaactgctcgcccagta
ttattaggtatcaccaaagcagccttagaaacaaatagtttcctatctgcagcttcattc
caagaaacaactaaagtcttaactgacgcggcaatccgtggtaaagaagaccacttactt
ggattaaaagagaatgttattatcggtaagatcatccctgcaggtacaggtatggctcgc
taccgtgaaatggaaccgaaaaaaatcggtgacacacaacaattaatctacggagaagaa
gcagacgtagatactgaaattagcccaattgactactcaagtattcaagaaaactaa
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